Browse Element(s) Details


Os.53993.2.S1_at

Description gb:AK109641.1
DB_XREF= gi:32994850
TID=Os.53993.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E12, full insert sequence.
FL= gb:AK109641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2736010/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g27330OsAffx.24452.1.S1_at11/112+16098367..16098705expressed protein
LOC_Os02g27340Os.18708.1.S1_at11/112+16098752..16104465Riboflavin biosynthesis protein ribD, putative, expressed
LOC_Os02g27350OsAffx.24453.3.S1_x_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.3.S1_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.1.S1_x_at4/112+16105743..16108460expressed protein
LOC_Os02g27360Os.53993.1.S1_x_at11/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.34493.1.A1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.53993.2.S1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27370OsAffx.16940.2.S1_s_at11/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.24405.1.S1_at2/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.16940.1.S1_at1/112+16129148..16129498hypothetical protein
LOC_Os02g27380NANA2+16130523..16138359retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53993.2.S1_at--728--751Chr02:16113166..16113190 (25 bp)
ATGTACGCCATTATACTCTGCCAAT
LOC_Os02g27360
Os.53993.2.S1_at--105--10371Chr02:16113109..16113133 (25 bp)
TTTTTCTCTGCTTCTGTATGTCCCT
LOC_Os02g27360
Os.53993.2.S1_at--1107--6911Chr02:16113094..16113118 (25 bp)
GTATGTCCCTTGTTTACTTTGTTTG
LOC_Os02g27360
Os.53993.2.S1_at--188--6391Chr02:16113069..16113093 (25 bp)
GATCGTTCTTCGTTGCTTGCTAAAT
LOC_Os02g27360
Os.53993.2.S1_at--562--9071Chr02:16113056..16113080 (25 bp)
TGCTTGCTAAATAGAGCCTCTTTTT
LOC_Os02g27360
Os.53993.2.S1_at--898--8891Chr02:16112984..16113008 (25 bp)
TGAGTATATGACTGTCTCCCTGCTA
LOC_Os02g27360
Os.53993.2.S1_at--648--9311Chr02:16112968..16112992 (25 bp)
TCCCTGCTATGGGTCTATGAGGCTT
LOC_Os02g27360
Os.53993.2.S1_at--617--2851Chr02:16112931..16112955 (25 bp)
AAGTCCGTAGTTTCTGGCTGATGCT
LOC_Os02g27360
Os.53993.2.S1_at--863--8851NONE
TGATGCTTCATTTTACACCAGGAAG
NONE
Os.53993.2.S1_at--95--6131Chr02:16112852..16112876 (25 bp)
GAGTGTGATCGGTAGTTGCTTTCCT
LOC_Os02g27360
Os.53993.2.S1_at--765--6671Chr02:16112838..16112862 (25 bp)
GTTGCTTTCCTACTTACGATATTCT
LOC_Os02g27360
Target Sequence 
ATGTACGCCATTATACTCTGCCAATTATAGTTATGTGCTTGTTTTTTTTTTCTCTTTTTTTTCTCTGCTTCTGTATGTCC
CTTGTTTACTTTGTTTGGATCGTTCTTCGTTGCTTGCTAAATAGAGCCTCTTTTTTTTTTACCAATGCGTTTAATTTGAT
TCGTTATATAGTCTTGCATATGAGTATATGACTGTCTCCCTGCTATGGGTCTATGAGGCTTAACTGGCATAAGAAGTCCG
TAGTTTCTGGCTGATGCTTCATTTTACACCAGGAAGGTGATTTCATCAACTTTTGTGAATGATATGGGCCAAGAGTGTGA
TCGGTAGTTGCTTTCCTACTTACGATATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53993.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis