Browse Element(s) Details


Os.53993.1.S1_x_at

Description gb:AK101185.1
DB_XREF= gi:32986394
TID=Os.53993.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029J01, full insert sequence.
FL= gb:AK101185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2736011/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g27330OsAffx.24452.1.S1_at11/112+16098367..16098705expressed protein
LOC_Os02g27340Os.18708.1.S1_at11/112+16098752..16104465Riboflavin biosynthesis protein ribD, putative, expressed
LOC_Os02g27350OsAffx.24453.3.S1_x_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.3.S1_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.1.S1_x_at4/112+16105743..16108460expressed protein
LOC_Os02g27360Os.53993.1.S1_x_at11/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.34493.1.A1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.53993.2.S1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27370OsAffx.16940.2.S1_s_at11/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.24405.1.S1_at2/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.16940.1.S1_at1/112+16129148..16129498hypothetical protein
LOC_Os02g27380NANA2+16130523..16138359retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53993.1.S1_x_at--543--9711Chr02:16109674..16109698 (25 bp)
TCAAGCTATCGGGTGGGCAGATTAC
LOC_Os02g27360
Os.53993.1.S1_x_at--698--4791Chr02:16109501..16109525 (25 bp)
GCTCCTCCAGCATTAAGATCAGTGA
LOC_Os02g27360
Os.53993.1.S1_x_at--111--6771Chr02:16109454..16109478 (25 bp)
GTTAATGCGGACGATATCTCCTCCG
LOC_Os02g27360
Os.53993.1.S1_x_at--150--471Chr02:16109439..16109463 (25 bp)
ATCTCCTCCGGCTGTGAAGTTCAGT
LOC_Os02g27360
Os.53993.1.S1_x_at--968--1211Chr02:16109422..16109446 (25 bp)
AGTTCAGTGGCGCAAGTCCTTGATT
LOC_Os02g27360
Os.53993.1.S1_x_at--597--4271Chr02:16109355..16109379 (25 bp)
CCTGGCTTTGGAATCTTGGGTGCAC
LOC_Os02g27360
Os.53993.1.S1_x_at--1079--10831Chr02:16109340..16109364 (25 bp)
TTGGGTGCACAATACGTCTGTTCTG
LOC_Os02g27360
Os.53993.1.S1_x_at--459--5691Chr02:16109254..16109278 (25 bp)
GACTTGACACTGTGAGCACTTGTTT
LOC_Os02g27360
Os.53993.1.S1_x_at--731--8151Chr02:16109210..16109234 (25 bp)
GGAAATACTACACACCTAGCACATT
LOC_Os02g27360
Os.53993.1.S1_x_at--33--2131Chr02:16109179..16109203 (25 bp)
ACAGGGTTGGACTAACACGAGCTTT
LOC_Os02g27360
Os.53993.1.S1_x_at--666--351Chr02:16109085..16109109 (25 bp)
ATAAGCGGCATCATAGTTTTAGTCT
LOC_Os02g27360
Target Sequence 
TCAAGCTATCGGGTGGGCAGATTACAACTGCTCCTCCAGCATTAAGATCAGTGATGACAAGGGATCAACATACACTGTTA
ATGCGGACGATATCTCCTCCGGCTGTGAAGTTCAGTGGCGCAAGTCCTTGATTTTGTTGCTAGCAACAACAGTGATCAGC
TATTTAATGTTGTAACCTGGCTTTGGAATCTTGGGTGCACAATACGTCTGTTCTGAAAATGATAGAAACTGATTTTTATT
CTTACGATAAAAGGGGGGAGAAAAAGTAGAAGCTTAGACTTGACACTGTGAGCACTTGTTTTGAGGGGGGCACAGAGAGA
GGAAATACTACACACCTAGCACATTGTACAAACAGGGTTGGACTAACACGAGCTTTGAAAAGCATACATTTAGAAGTAAA
TTCAATGTTGTTTGTTTCTAGAAATTGTCTAAACTGTTCTGCTTAATAAGCGGCATCATAGTTTTAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53993.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis