Browse Element(s) Details


OsAffx.12223.1.S1_at

Description tigr:9630.m02589
TID=OsAffx.12223.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pathogenesis-related protein 1 - maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2730011/11SCP-like extracellular protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27270Os.54774.1.S1_at1/112+16051474..16052519retrotransposon, putative, centromere-specific
LOC_Os02g27270Os.54774.1.S1_x_at1/112+16051474..16052519retrotransposon, putative, centromere-specific
LOC_Os02g27270OsAffx.13218.1.S1_at1/112+16051474..16052519retrotransposon, putative, centromere-specific
LOC_Os02g27280OsAffx.27843.1.S1_at3/112+16060713..16064325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27290OsAffx.12222.1.S1_at11/112+16068149..16068750hypothetical protein
LOC_Os02g27300OsAffx.12223.1.S1_at11/112+16076706..16077536SCP-like extracellular protein
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g27330OsAffx.24452.1.S1_at11/112+16098367..16098705expressed protein
LOC_Os02g27340Os.18708.1.S1_at11/112+16098752..16104465Riboflavin biosynthesis protein ribD, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12223.1.S1_at--1019--4031Chr02:16076776..16076800 (25 bp)
CGATCGCGGCCTACGTCTACGGCGA
LOC_Os02g27300
OsAffx.12223.1.S1_at--711--5191Chr02:16076821..16076845 (25 bp)
GCAATAGTACCGAGCGCTTCCTCTA
LOC_Os02g27300
OsAffx.12223.1.S1_at--907--5571Chr02:16076939..16076963 (25 bp)
GAAAGGTGACTGTGATCTCAAGCAC
LOC_Os02g27300
OsAffx.12223.1.S1_at--73--6151Chr02:16077103..16077127 (25 bp)
GAGGGTGCACCCACTACAAGCAGAT
LOC_Os02g27300
OsAffx.12223.1.S1_at--687--4651Chr02:16077159..16077183 (25 bp)
GCGTCCGTGAGCTGCGACGCGAACC
LOC_Os02g27300
OsAffx.12223.1.S1_at--501--3951Chr02:16077185..16077209 (25 bp)
CGGCACGTTCATGGTGTGCGAGTAC
LOC_Os02g27300
OsAffx.12223.1.S1_at--26--7471Chr02:16077198..16077222 (25 bp)
GTGTGCGAGTACGATCCACCAGGCA
LOC_Os02g27300
OsAffx.12223.1.S1_at--431--6091Chr02:16077204..16077228 (25 bp)
GAGTACGATCCACCAGGCAACGTGC
LOC_Os02g27300
OsAffx.12223.1.S1_at--532--4471Chr02:16077246..16077270 (25 bp)
GCCGGATGCGGACACTTCAATCAAA
LOC_Os02g27300
OsAffx.12223.1.S1_at--1084--9731Chr02:16077262..16077493 (25 bp)
TCAATCAAACAGGTCGCTTCACAGC
LOC_Os02g27300
OsAffx.12223.1.S1_at--441--9351Chr02:16077482..16077506 (25 bp)
TCGCTTCACAGCTCTAGATCCACAA
LOC_Os02g27300
Target Sequence 
CGATCGCGGCCTACGTCTACGGCGACAGCGGCTTCGGCATCCCCCGCAATAGTACCGAGCGCTTCCTCTACCTACAGAAC
CAGGCCCGCGCCGACGTCGGCGTCGCGCCGCTCGCGTGGGACGGCACGGTGGCCGCGTACGCGGAGAAGTACGCCGCCGC
GAGGAAAGGTGACTGTGATCTCAAGCACTCCGGCGGACCATACGGGGAGAACATATTCTGGGGCAGCGCGGGCGCCAACT
GGACGGCCACCGACGCGGTGGCCTCGTGGGCCTCGGAGAAGCAGTGGTACAACTGCAGCGACGACTCGTGCGACGCTCCC
GGTGGGCGAGGGTGCACCCACTACAAGCAGATGGTGTGGGCGAAGACGACCAAGGTCGGGTGCGCGTCCGTGAGCTGCGA
CGCGAACCGCGGCACGTTCATGGTGTGCGAGTACGATCCACCAGGCAACGTGCCGGGTGTCCAGGCGTACGCCGGATGCG
GACACTTCAATCAAACAGGTCGCTTCACAGCTCTAGATCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis