Browse Element(s) Details


OsAffx.12222.1.S1_at

Description tigr:9630.m02588
TID=OsAffx.12222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2729011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27270Os.54774.1.S1_at1/112+16051474..16052519retrotransposon, putative, centromere-specific
LOC_Os02g27270Os.54774.1.S1_x_at1/112+16051474..16052519retrotransposon, putative, centromere-specific
LOC_Os02g27270OsAffx.13218.1.S1_at1/112+16051474..16052519retrotransposon, putative, centromere-specific
LOC_Os02g27280OsAffx.27843.1.S1_at3/112+16060713..16064325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27290OsAffx.12222.1.S1_at11/112+16068149..16068750hypothetical protein
LOC_Os02g27300OsAffx.12223.1.S1_at11/112+16076706..16077536SCP-like extracellular protein
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12222.1.S1_at--296--7971Chr02:16068184..16068208 (25 bp)
GGATCTGGCCACTAGGGACAAGGAC
LOC_Os02g27290
OsAffx.12222.1.S1_at--621--7491Chr02:16068228..16068252 (25 bp)
GTGGTGCGGAGCTCACGGTGGCGGT
LOC_Os02g27290
OsAffx.12222.1.S1_at--66--7551Chr02:16068245..16068403 (25 bp)
GTGGCGGTGGCAAGCTGGCAGGCAG
LOC_Os02g27290
OsAffx.12222.1.S1_at--1106--5811Chr02:16068448..16068472 (25 bp)
GACCGGCACGGATGGAGGCTGCGTA
LOC_Os02g27290
OsAffx.12222.1.S1_at--95--8011Chr02:16068461..16068485 (25 bp)
GGAGGCTGCGTAGGCCGGCAAGGCA
LOC_Os02g27290
OsAffx.12222.1.S1_at--390--991Chr02:16068557..16068581 (25 bp)
AGGAGTGTCGTGGTGCGATCGGCAA
LOC_Os02g27290
OsAffx.12222.1.S1_at--114--7311Chr02:16068569..16068593 (25 bp)
GTGCGATCGGCAAAGGTAGTGACCA
LOC_Os02g27290
OsAffx.12222.1.S1_at--364--4051Chr02:16068600..16068624 (25 bp)
CGATAGGCTACAAGGTGCGGTCGGT
LOC_Os02g27290
OsAffx.12222.1.S1_at--529--931Chr02:16068631..16068655 (25 bp)
AGGCAGAGGCTAGCCGGCGAGGGTC
LOC_Os02g27290
OsAffx.12222.1.S1_at--102--1651Chr02:16068664..16068688 (25 bp)
AGCGTTGCCCTTGCGCCGACAGAGG
LOC_Os02g27290
OsAffx.12222.1.S1_at--219--4551Chr02:16068670..16068694 (25 bp)
GCCCTTGCGCCGACAGAGGTTAGAT
LOC_Os02g27290
Target Sequence 
GGATCTGGCCACTAGGGACAAGGACGAGGCCCGTCGCGGCGGTGGTGGTGCGGAGCTCACGGTGGCGGTGGCAAGCTGGC
AGGCAGCGGCGGAGATCGGCGTGGGGACCGCGGCGCGAGGAGGCACGGAGGACCGGCACGGATGGAGGCTGCGTAGGCCG
GCAAGGCACAGGCAGTGGTGGCGACGGGGTTGGCTGCGGCATGAGGAGGCTTGGCCGGTGGCGGCAGTGGTGGTGCCGCA
GGAGTGTCGTGGTGCGATCGGCAAAGGTAGTGACCAGCGCAGCGATAGGCTACAAGGTGCGGTCGGTGGTGGTAGGCAGA
GGCTAGCCGGCGAGGGTCGCCGGTGCAGCGTTGCCCTTGCGCCGACAGAGGTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis