Browse Element(s) Details


OsAffx.27843.1.S1_at

Description tigr:9634.m02674
TID=OsAffx.27843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2803011/11hypothetical protein
LOC_Os02g272803/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27990Os.52447.1.S1_x_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g27990OsAffx.25367.1.S1_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g28000Os.14208.1.S1_at11/116+15890358..15894672Carboxyl-terminal proteinase, putative, expressed
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific
LOC_Os06g28030OsAffx.27843.1.S1_at11/116+15905024..15906173hypothetical protein
LOC_Os06g28040OsAffx.27844.1.S1_at10/116+15909858..15911273hypothetical protein
LOC_Os06g28050Os.19061.2.S1_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_s_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_at10/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28060Os.15845.2.S1_at11/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_x_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27843.1.S1_at--701--2731Chr06:15905771..15905795 (25 bp)
AAGCAATGCACCTCCGAAGCTGAAA
LOC_Os06g28030
OsAffx.27843.1.S1_at--173--5613Chr06:15905750..15905774 (25 bp)
GAAATTGACCGCTATCTCTTTGATG
LOC_Os06g28030
OsAffx.27843.1.S1_at--300--3771Chr06:15905735..15905759 (25 bp)
CTCTTTGATGCCCTTGTCAAGCTTA
LOC_Os06g28030
OsAffx.27843.1.S1_at--487--8671Chr06:15905705..15905729 (25 bp)
TGTGACCACATTTTGTTGCCTTACC
LOC_Os06g28030
OsAffx.27843.1.S1_at--467--251Chr06:15905400..15905424 (25 bp)
ATATCCTTCGTCAACTAGAGGCCAC
LOC_Os06g28030
OsAffx.27843.1.S1_at--983--9132Chr06:15905368..15905392 (25 bp)
TGCGGATTCTACGTCATGCGGTACA
LOC_Os06g28030
OsAffx.27843.1.S1_at--17--831Chr06:15905325..15905349 (25 bp)
ATGGATACAATCACCGCAATGCCGA
LOC_Os06g28030
OsAffx.27843.1.S1_at--886--5593Chr06:15905185..15905209 (25 bp)
GAAATTCTACCACACGTCTTCAAAG
LOC_Os06g28030
OsAffx.27843.1.S1_at--769--2693Chr12:16121476..16121500 (25 bp)
AAGCTCTCACTGACGAGTTTTGCGG
NONE
OsAffx.27843.1.S1_at--559--1211Chr06:15905148..15905172 (25 bp)
AGTTTTGCGGGTTCATCTGTCATCA
LOC_Os06g28030
OsAffx.27843.1.S1_at--234--2234Chr12:16121548..16121572 (25 bp)
ACAAGGTCCCACAACGAGTGCAATC
NONE
Target Sequence 
AAGCAATGCACCTCCGAAGCTGAAATTGACCGCTATCTCTTTGATGCCCTTGTCAAGCTTAATGGATGTGACCACATTTT
GTTGCCTTACCTTTCTCACCATCATTGGATCCTCCTCGTAATCAACATCGACGACAGTTCGATTTGCATATATGATAGCC
TGAGAGGGATAGACAAGTACCAAACTATTTTAAGTGCACTAAATAGGGCATATAAGAAGTACCGTAGGTCCGGAAGATCG
TATGGGAGATGCAAGATTGATGCAACTGAATTTCGGATTTTCGAACATAAATATATCCTTCGTCAACTAGAGGCCACCGA
CCTCTGCGGATTCTACGTCATGCGGTACATGCTATATTTTGTAGAGGATGGATACAATCACCGCAATGCCGAGAAATTGG
GTCTCGATACAAGTGAAATTCTACCACACGTCTTCAAAGCTCTCACTGACGAGTTTTGCGGGTTCATCTGTCATCATGTT
GTAGACCCAACTGGCGAATACAACATCAACAAGGTCCCACAACGAGTGCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis