Browse Element(s) Details


OsAffx.27844.1.S1_at

Description tigr:9634.m02675
TID=OsAffx.27844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2804010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27990Os.52447.1.S1_x_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g27990OsAffx.25367.1.S1_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g28000Os.14208.1.S1_at11/116+15890358..15894672Carboxyl-terminal proteinase, putative, expressed
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific
LOC_Os06g28030OsAffx.27843.1.S1_at11/116+15905024..15906173hypothetical protein
LOC_Os06g28040OsAffx.27844.1.S1_at10/116+15909858..15911273hypothetical protein
LOC_Os06g28050Os.19061.2.S1_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_s_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_at10/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28060Os.15845.2.S1_at11/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_x_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27844.1.S1_at--205--2231Chr06:15909901..15909925 (25 bp)
ACAATGTGCATGTCAGGCCTAGGGT
LOC_Os06g28040
OsAffx.27844.1.S1_at--463--3471Chr06:15909914..15909938 (25 bp)
CAGGCCTAGGGTCAGCGTCGGAGAT
LOC_Os06g28040
OsAffx.27844.1.S1_at--910--4011Chr06:15909929..15909953 (25 bp)
CGTCGGAGATGTGGACTTCGACCTC
LOC_Os06g28040
OsAffx.27844.1.S1_at--704--10631Chr06:15909945..15909969 (25 bp)
TTCGACCTCAAGACCAGCCTAATTA
LOC_Os06g28040
OsAffx.27844.1.S1_at--70--1391Chr06:15909955..15909979 (25 bp)
AGACCAGCCTAATTACCATGGCGCT
LOC_Os06g28040
OsAffx.27844.1.S1_at--870--3131Chr06:15909965..15909989 (25 bp)
AATTACCATGGCGCTGGCTAGCCCA
LOC_Os06g28040
OsAffx.27844.1.S1_at--188--8051NONE
GGAGATTTGTAGCACATTGGCTATA
NONE
OsAffx.27844.1.S1_at--809--10731Chr06:15910932..15910956 (25 bp)
TTGAACTTGCTCTAACTAGGGGTAG
LOC_Os06g28040
OsAffx.27844.1.S1_at--686--6951Chr06:15910953..15910976 (24 bp)
GTAGCAAGGCCCATACCGGTGACGT
LOC_Os06g28040
OsAffx.27844.1.S1_at--28--1791Chr06:15910967..15911211 (25 bp)
ACCGGTGACGTATTATGCTTCTGCC
LOC_Os06g28040
OsAffx.27844.1.S1_at--188--7771Chr06:15910970..15911214 (25 bp)
GGTGACGTATTATGCTTCTGCCCAT
LOC_Os06g28040
Target Sequence 
ACAATGTGCATGTCAGGCCTAGGGTCAGCGTCGGAGATGTGGACTTCGACCTCAAGACCAGCCTAATTACCATGGCGCTG
GCTAGCCCATTCTGTGGCAAGCCAAATGAGGACTCAAGTGCTCATCTGCAACCGTTCCTGGAGATTTGTAGCACATTGGC
TATAGATAAATTGGAGCTAGCAGTGGGCTATACTATTGAACTTGCTCTAACTAGGGGTAGCAAGGCCCATACCGGTGACG
TATTATGCTTCTGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis