Browse Element(s) Details


Os.53039.1.S1_at

Description gb:AK070553.1
DB_XREF= gi:32980577
TID=Os.53039.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059A13, full insert sequence.
FL= gb:AK070553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0166011/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01620NANA4+409272..415306retrotransposon protein, putative, unclassified
LOC_Os04g01630NANA4+416053..419343retrotransposon protein, putative, unclassified
LOC_Os04g01640NANA4+423796..424539hypothetical protein
LOC_Os04g01650Os.54604.1.S1_at9/114+433847..435380D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein
LOC_Os04g01660Os.53039.1.S1_at11/114+436550..437648D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53039.1.S1_at--230--4971Chr04:437063..437087 (25 bp)
GCATCATCGGCCTCGGCAGCATAGG
LOC_Os04g01660
Os.53039.1.S1_at--845--8251Chr04:437077..437101 (25 bp)
GGCAGCATAGGGTCGGCGATCGCGA
LOC_Os04g01660
Os.53039.1.S1_at--1140--8633Chr08:21577333..21577355 (23 bp)
TGGGCCATGGACAACGTGGTGCTCA
NONE
Os.53039.1.S1_at--285--8531Chr04:437432..437456 (25 bp)
TGGACAACGTGGTGCTCACCCCGCA
LOC_Os04g01660
Os.53039.1.S1_at--258--4091Chr04:437535..437559 (25 bp)
CGAGCCGCTGCTTACGCGAGTGGAA
LOC_Os04g01660
Os.53039.1.S1_at--314--9071Chr04:437543..437567 (25 bp)
TGCTTACGCGAGTGGAAGCCTCGGA
LOC_Os04g01660
Os.53039.1.S1_at--810--8511Chr04:437555..437579 (25 bp)
TGGAAGCCTCGGAGTGACGCACACT
LOC_Os04g01660
Os.53039.1.S1_at--984--1111Chr04:437567..437591 (25 bp)
AGTGACGCACACTTGCCCTGTTAGT
LOC_Os04g01660
Os.53039.1.S1_at--259--2071Chr04:437577..437601 (25 bp)
ACTTGCCCTGTTAGTCCAACAATTG
LOC_Os04g01660
Os.53039.1.S1_at--219--6791Chr04:437586..437610 (25 bp)
GTTAGTCCAACAATTGACTTATTCT
LOC_Os04g01660
Os.53039.1.S1_at--955--5691Chr04:437601..437625 (25 bp)
GACTTATTCTTATTATCATCATTAT
LOC_Os04g01660
Target Sequence 
GCATCATCGGCCTCGGCAGCATAGGGTCGGCGATCGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAAC
CGCCGGCGAAGGGAGGACGTGGCCTACGCCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGT
GGCGTGCGCGCTGACGGCGGAGACGCGGCGCATCGTGGACCGGGGCGTGCTGGACGCGCTGGGGGAGCGCGGCGTGGTCG
TGAACGTGGCGCGCGGCGCCAACGTCGACGAGGCGGAGCTGGTGCGCGCGCTGGCGGAGGGCAGGGTCGCCGGCGCGGGG
TTGGAAGTGTTCGACGACGAGCCCAACGTGCCGCCGGAGCTGTGGGCCATGGACAACGTGGTGCTCACCCCGCACCAGGC
CATCTTCACCCCGGAATCCATGGCCGACCTGAGCCGCGTCGTCCTCGCCAACCTCGACGCGTTCTTCGCCGGCGAGCCGC
TGCTTACGCGAGTGGAAGCCTCGGAGTGACGCACACTTGCCCTGTTAGTCCAACAATTGACTTATTCTTATTATCATCAT
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis