Browse Element(s) Details


OsAffx.3697.1.S1_at

Description tigr:9632.m00084
TID=OsAffx.3697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0180010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01800OsAffx.3697.1.S1_at10/114+506088..506955hypothetical protein
LOC_Os04g01810OsAffx.25825.1.S1_at11/114+510720..515159Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g01820Os.10827.1.S1_x_at10/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01820Os.46055.2.S1_x_at5/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01830NANA4+519882..520543hypothetical protein
LOC_Os04g01840OsAffx.25936.2.S1_x_at2/114+522420..524829transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01850OsAffx.25936.1.S1_s_at10/114+527905..528397hypothetical protein
LOC_Os04g01850OsAffx.25936.7.S1_s_at9/114+527905..528397hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3697.1.S1_at--144--6571Chr04:506893..506917 (25 bp)
GATTCGGCTAGCCTTCAACGGTAAA
LOC_Os04g01800
OsAffx.3697.1.S1_at--901--4831Chr04:506887..506911 (25 bp)
GCTAGCCTTCAACGGTAAAACTCTG
LOC_Os04g01800
OsAffx.3697.1.S1_at--81--2431Chr04:506871..506895 (25 bp)
AAAACTCTGCCCGTGCACTATGAAG
LOC_Os04g01800
OsAffx.3697.1.S1_at--1092--4531Chr04:506863..506887 (25 bp)
GCCCGTGCACTATGAAGCAAACCAA
LOC_Os04g01800
OsAffx.3697.1.S1_at--459--273Chr08:25759891..25759911 (21 bp)
ATATGTACGGCAAGGCTAGCAAGCT
NONE
OsAffx.3697.1.S1_at--722--8291NONE
GGCTAGCAAGCTGTTTCATAAAACC
NONE
OsAffx.3697.1.S1_at--105--3271Chr04:506165..506189 (25 bp)
CAACAAAATGGGTGCATCGACGAGA
LOC_Os04g01800
OsAffx.3697.1.S1_at--22--531Chr04:506150..506174 (25 bp)
ATCGACGAGATAGCTGTTCCATGTA
LOC_Os04g01800
OsAffx.3697.1.S1_at--939--9991Chr04:506140..506164 (25 bp)
TAGCTGTTCCATGTATGAGGCAGAC
LOC_Os04g01800
OsAffx.3697.1.S1_at--1085--8871Chr04:506125..506149 (25 bp)
TGAGGCAGACTTGGGAGCTTCATCC
LOC_Os04g01800
OsAffx.3697.1.S1_at--283--5691Chr04:506118..506142 (25 bp)
GACTTGGGAGCTTCATCCTAGGTGG
LOC_Os04g01800
Target Sequence 
GATTCGGCTAGCCTTCAACGGTAAAACTCTGCCCGTGCACTATGAAGCAAACCAACCAAACACAATATGTACGGCAAGGC
TAGCAAGCTGTTTCATAAAACCACATTATCAACAAAATGGGTGCATCGACGAGATAGCTGTTCCATGTATGAGGCAGACT
TGGGAGCTTCATCCTAGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis