Browse Element(s) Details


Os.27604.1.S1_at

Description gb:AK060600.1
DB_XREF= gi:32970618
TID=Os.27604.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H02, full insert sequence.
FL= gb:AK060600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5844011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58400OsAffx.12691.1.S1_at9/112+35706934..35708962hypothetical protein
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class
LOC_Os02g58440Os.27604.1.S1_at11/112+35733119..35737451Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g58450Os.33786.1.S1_at11/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450Os.17160.1.S1_s_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450OsAffx.13616.1.S1_x_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27604.1.S1_at--145--7171Chr02:35736114..35736138 (25 bp)
GTCTCCTGCGGATGACATTGCTGCT
LOC_Os02g58440
Os.27604.1.S1_at--318--9271Chr02:35736117..35736141 (25 bp)
TCCTGCGGATGACATTGCTGCTGAA
LOC_Os02g58440
Os.27604.1.S1_at--1142--9031Chr02:35736144..35736168 (25 bp)
TGCAGACGATGCGAGCAGGGAGCTG
LOC_Os02g58440
Os.27604.1.S1_at--643--8071Chr02:35736171..35736195 (25 bp)
GGAGCAGCAAGATGTAGAGACAGCA
LOC_Os02g58440
Os.27604.1.S1_at--157--5971Chr02:35736187..35736211 (25 bp)
GAGACAGCAGAAGAGTACGACTACG
LOC_Os02g58440
Os.27604.1.S1_at--997--6071Chr02:35736199..35736223 (25 bp)
GAGTACGACTACGAGATGGATGACG
LOC_Os02g58440
Os.27604.1.S1_at--677--6731Chr02:35736223..35736247 (25 bp)
GTTAATGCGGCGGAGGAAAATGACT
LOC_Os02g58440
Os.27604.1.S1_at--131--1871Chr02:35736284..35736308 (25 bp)
ACGACGACGATTTCGCGCGCAAAGT
LOC_Os02g58440
Os.27604.1.S1_at--619--191Chr02:35736293..35736317 (25 bp)
ATTTCGCGCGCAAAGTGGGTGTGAT
LOC_Os02g58440
Os.27604.1.S1_at--1080--5391Chr02:35736326..35736350 (25 bp)
GAAGCTGCGTTGCAGTAGGCGTGCC
LOC_Os02g58440
Os.27604.1.S1_at--602--9771Chr02:35736657..35736681 (25 bp)
TAAGATGATAAAAGGCCTTGAAGCC
LOC_Os02g58440
Target Sequence 
GTCTCCTGCGGATGACATTGCTGCTGAAGCTGCAGACGATGCGAGCAGGGAGCTGGAGGAGCAGCAAGATGTAGAGACAG
CAGAAGAGTACGACTACGAGATGGATGACGTTAATGCGGCGGAGGAAAATGACTNCCAGGAGTATGAAGACGAAGACGAT
GATTTGGAGGACGACGACGATTTCGCGCGCAAAGTGGGTGTGATGATCNCTTGAAGCTGCGTTGCAGTAGGCGTGCCNCT
ATATATGGTATGNCCGAAGAATTGAAAGATGTGTTAGTATCCCTCCCAACAAGATGTTGGTCTGTTTTTCTTGTGGTGCT
AGATACTTTTACTTCACTGCGCCAGAGAATTCAGCTAATAAAGTTGGGAGGAAGATAAAATTGGCTCATCGGAGAGCTTG
TGTTTCAGCCAAGAGGCGGCTGCTTGTACTNTAATGTGTGGGTGTGCTCTCCTCTGCCTGCTTGTGTTGTTGTATCATTA
GTTAAATCAAAATGNCCTAACAGGTTACACAATGTACTACTTCTATTTATATTCATCAGTGTATAAGATGATAAAAGGCC
TTGAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis