Browse Element(s) Details


Os.40059.1.S1_at

Description gb:AK122003.1
DB_XREF= gi:37991626
TID=Os.40059.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.40059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110K17, full insert sequence.
FL= gb:AK122003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class
LOC_Os02g58440Os.27604.1.S1_at11/112+35733119..35737451Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g58450Os.33786.1.S1_at11/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450Os.17160.1.S1_s_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450OsAffx.13616.1.S1_x_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed
LOC_Os02g58500Os.4603.1.S1_at11/112+35764745..35766255phospholipase A2, putative, expressed
LOC_Os02g58510Os.27193.1.S1_at11/112+35766329..35768918homoserine kinase family protein, expressed
LOC_Os02g58520Os.24128.1.A1_at11/112+35769161..35771397Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40059.1.S1_at--788--10731Chr02:35746136..35746160 (25 bp)
TTGAAGGATACGAGCCCAGTGGGTC
LOC_Os02g58470
Os.40059.1.S1_at--1095--1091Chr02:35746119..35746143 (25 bp)
AGTGGGTCGGACCATCGATTTCAAT
LOC_Os02g58470
Os.40059.1.S1_at--442--9051Chr02:35746092..35746116 (25 bp)
TGCAGATTCATCATCGAGGCACCCG
LOC_Os02g58470
Os.40059.1.S1_at--791--3831Chr02:35745976..35746000 (25 bp)
CTGCTCATCTGATCCTGCTAATATA
LOC_Os02g58470
Os.40059.1.S1_at--460--2411Chr02:35745952..35745976 (25 bp)
AAAAACTTGCTGCTGGGTTCTACTC
LOC_Os02g58470
Os.40059.1.S1_at--11--9791Chr02:35745829..35745853 (25 bp)
TAACTTACTGTACCTTCCTAAGGCA
LOC_Os02g58470
Os.40059.1.S1_at--124--3111Chr02:35745795..35745819 (25 bp)
AATAGCTTTTTCTTGGCCTGTGACT
LOC_Os02g58470
Os.40059.1.S1_at--334--2571Chr02:35745743..35745767 (25 bp)
AACGGCTTACTCTTCTTCTTATTAT
LOC_Os02g58470
Os.40059.1.S1_at--720--4851Chr02:35745688..35745712 (25 bp)
GCTACGTATGTGATGTGCTGGTCTC
LOC_Os02g58470
Os.40059.1.S1_at--767--1751Chr02:35745656..35745680 (25 bp)
ACCTCTAATCTGCTTGTCATGTATG
LOC_Os02g58470
Os.40059.1.S1_at--305--3011Chr02:35745630..35745654 (25 bp)
AATGAATGCCTCATCTCGATCATCT
LOC_Os02g58470
Target Sequence 
TTGAAGGATACGAGCCCAGTGGGTCGGACCATCGATTTCAATGGTGCAGATTCATCATCGAGGCACCCGCTTTCACCATT
GCCACCAAACTCCCCAGACTACAGGGCGCACAAGAAATGAAAATGAAAGCGACCATCATCCGCTGCTTATGGCAGGCGTG
CTGCTCATCTGATCCTGCTAATATAAAAACTTGCTGCTGGGTTCTACTCCAGTGGATAGAACGAAGAACCCCCCAAGGCA
TGACAAAGCCTACCTGAATGCTACTCGNTCTGGTTGTAGAGTCANCCTTTGGTCAGAAAACAACTTTTAACTTACTGTAC
CTTCCTAAGGCAAGTACTAGTAATAGCTTTTTCTTGGCCTGTGACTGGTCTCTCTGTTCATTTTCATGAATGTAACGGCT
TACTCTTCTTCTTATTATTAATTCTTGGTAGAGTATTAGTATTATGGAGCTACGTATGTGATGTGCTGGTCTCTCCTCTG
ACCTCTAATCTGCTTGTCATGTATGAAATGAATGCCTCATCTCGATCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis