Browse Element(s) Details


Os.4603.1.S1_at

Description gb:AK108410.1
DB_XREF= gi:32993619
TID=Os.4603.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4603 (NCBI UniGene Cluster)
UG_TITLE=MRNA for putative phospholipase A2, isoform I
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H01, full insert sequence.
FL= gb:AK108410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5850011/11phospholipase A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed
LOC_Os02g58500Os.4603.1.S1_at11/112+35764745..35766255phospholipase A2, putative, expressed
LOC_Os02g58510Os.27193.1.S1_at11/112+35766329..35768918homoserine kinase family protein, expressed
LOC_Os02g58520Os.24128.1.A1_at11/112+35769161..35771397Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530OsAffx.3105.1.S1_at11/112+35773561..35775519major facilitator superfamily protein, expressed
LOC_Os02g58540OsAffx.24924.1.S1_at11/112+35777415..35778267Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550Os.47401.1.A1_s_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550Os.18407.1.S1_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004623molecular_functionphospholipase A2 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4603.1.S1_at--860--10831Chr02:35765263..35765287 (25 bp)
TTGGGCACCCAGAAGTTGGAACTGT
LOC_Os02g58500
Os.4603.1.S1_at--338--10331Chr02:35765235..35765259 (25 bp)
TTTAATTTGGCTTCTCCTTACGGAG
LOC_Os02g58500
Os.4603.1.S1_at--1064--6231Chr02:35765192..35765216 (25 bp)
GATGGTTAACCGTATTTGATTGCAC
LOC_Os02g58500
Os.4603.1.S1_at--1144--5271Chr02:35765143..35765167 (25 bp)
GAATGTATTGATTTGGGCAGCCTAA
LOC_Os02g58500
Os.4603.1.S1_at--649--10391Chr02:35765109..35765133 (25 bp)
TTTTCCCCTTGCTGCACAATTTGCA
LOC_Os02g58500
Os.4603.1.S1_at--1147--2271Chr02:35765036..35765060 (25 bp)
AAATGTTCCGGCTCACTGGGTATGG
LOC_Os02g58500
Os.4603.1.S1_at--785--10391Chr02:35765001..35765025 (25 bp)
TTTTCCTTTCCTTTATGCTGTAACA
LOC_Os02g58500
Os.4603.1.S1_at--1022--7691Chr02:35764938..35764962 (25 bp)
GGGTCTGGATCTCTTTAACATAATA
LOC_Os02g58500
Os.4603.1.S1_at--782--2471Chr02:35764909..35764933 (25 bp)
AACACTCCTGAGTCTCTGAGCATGT
LOC_Os02g58500
Os.4603.1.S1_at--495--8611Chr02:35764871..35764895 (25 bp)
TGGTGCTTGTGTAATCAGTGGCGTC
LOC_Os02g58500
Os.4603.1.S1_at--361--3471Chr02:35764856..35764880 (25 bp)
CAGTGGCGTCTGTTGATTGATTGAT
LOC_Os02g58500
Target Sequence 
TTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACTCCATTTCTTAGATGATGGTTAA
CCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCC
CCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCT
CACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATC
AGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACACTCCTGAGTCTCTGAGCATGTTATGGNCAAACTCTGGTGCTT
GTGTAATCAGTGGCGTCTGTTGATTGATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis