Browse Element(s) Details

Os.50372.1.S2_x_at

Description

gb:CB675631
DB_XREF= gi:29679356
DB_XREF=OSJNEe11H21.f
CLONE=OSJNEe11H21
TID=Os.50372.1
CNT=2
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.50372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061B11, full insert sequence
FL= gb:AK120919.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g58560	11/11	glycosyl transferase family 48 protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g58490	Os.7419.1.S1_a_at	11/11	2	+	35755309..35762519	PINHEAD protein, putative, expressed
LOC_Os02g58500	Os.4603.1.S1_at	11/11	2	+	35764745..35766255	phospholipase A2, putative, expressed
LOC_Os02g58510	Os.27193.1.S1_at	11/11	2	+	35766329..35768918	homoserine kinase family protein, expressed
LOC_Os02g58520	Os.24128.1.A1_at	11/11	2	+	35769161..35771397	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530	OsAffx.3105.1.S1_at	11/11	2	+	35773561..35775519	major facilitator superfamily protein, expressed
LOC_Os02g58540	OsAffx.24924.1.S1_at	11/11	2	+	35777415..35778267	Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550	Os.47401.1.A1_s_at	11/11	2	+	35778974..35781951	chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550	Os.18407.1.S1_at	11/11	2	+	35778974..35781951	chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560	OsAffx.24925.1.S1_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	OsAffx.24925.1.S1_x_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.50372.1.S2_x_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.17864.1.S1_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.38768.1.A1_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.50372.1.S1_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.38768.1.A1_s_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570	Os.19421.1.S1_at	11/11	2	+	35798862..35800671	PRLI-interacting factor A, putative, expressed
LOC_Os02g58580	Os.38243.1.S1_at	11/11	2	+	35801176..35806577	Metal tolerance protein C2, putative, expressed
LOC_Os02g58580	Os.8441.1.S1_s_at	11/11	2	+	35801176..35806577	Metal tolerance protein C2, putative, expressed
LOC_Os02g58580	Os.8441.1.S1_at	11/11	2	+	35801176..35806577	Metal tolerance protein C2, putative, expressed
LOC_Os02g58590	NA	NA	2	+	35808178..35812308	GNT-I family protein, expressed
LOC_Os02g58600	Os.22510.1.A1_at	1/11	2	+	35813605..35814421	hypothetical protein
LOC_Os02g58610	Os.54945.1.S1_at	11/11	2	+	35815834..35817102	Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620	Os.27485.1.S1_at	1/11	2	+	35817332..35823762	MATE efflux family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006075	biological_process	beta-1,3 glucan biosynthesis
GO:0009556	biological_process	microsporogenesis
GO:0009620	biological_process	response to fungi
GO:0009860	biological_process	pollen tube growth
GO:0009863	biological_process	salicylic acid mediated signaling pathway
GO:0009870	biological_process	defense response signaling pathway, resistance gene-dependent
GO:0009965	biological_process	leaf morphogenesis
GO:0010208	biological_process	pollen wall formation
GO:0000148	cellular_component	1,3-beta-glucan synthase complex
GO:0009504	cellular_component	cell plate
GO:0003843	molecular_function	1,3-beta-glucan synthase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50372.1.S2_x_at--315--797	1	Chr02:35791112..35791136 (25 bp)	GGATCTGTTACTTGTGCCATACTGC	LOC_Os02g58560
Os.50372.1.S2_x_at--953--919	1	Chr02:35791126..35791150 (25 bp)	TGCCATACTGCAAAGATCGTGACAT	LOC_Os02g58560
Os.50372.1.S2_x_at--341--795	1	Chr02:35791151..35791175 (25 bp)	GGATATAATCCAGTGGCCACCATTC	LOC_Os02g58560
Os.50372.1.S2_x_at--381--845	1	Chr02:35791165..35791189 (25 bp)	GGCCACCATTCTTGCTTGCTAGCAA	LOC_Os02g58560
Os.50372.1.S2_x_at--618--1071	1	Chr02:35791180..35791300 (25 bp)	TTGCTAGCAAGATCCCGATAGCGTT	LOC_Os02g58560
Os.50372.1.S2_x_at--181--771	1	Chr02:35791348..35791372 (25 bp)	GGGTGAAATCAGACCCATATTTTAC	LOC_Os02g58560
Os.50372.1.S2_x_at--729--487	1	Chr02:35791377..35791401 (25 bp)	GCTATCAAGGAATGCTATGCTTCAT	LOC_Os02g58560
Os.50372.1.S2_x_at--844--789	1	Chr02:35791553..35791577 (25 bp)	GGTTGACGACCATATAGCACAAGAT	LOC_Os02g58560
Os.50372.1.S2_x_at--819--705	1	Chr02:35791603..35791627 (25 bp)	GTAACCTTCCTACCCTGAGCAAGAA	LOC_Os02g58560
Os.50372.1.S2_x_at--992--5	1	Chr02:35791632..35791652 (21 bp)	ATTGAGCTGCTTGAATTGCTGCAAA	LOC_Os02g58560
Os.50372.1.S2_x_at--54--713	1	Chr02:35791750..35791774 (25 bp)	GTCAGGTCATCATTTTGTTCCAGGA	LOC_Os02g58560

Target Sequence

GGATCTGTTACTTGTGCCATACTGCAAAGATCGTGACATGGATATAATCCAGTGGCCACCATTCTTGCTTGCTAGCAAGA
TCCCGATAGCGTTGGATATGGCTGCAGACAGTGAAGGAAAAGATCGTGATCTTAAGAAGAGGGTGAAATCAGACCCATAT
TTTACTTATGCTATCAAGGAATGCTATGCTTCATTCAAGAACATCATATATACTTTGGTGGTTGGTGCAAAAGAGAGAGA
CGTCATACAGAAGATTTTTACAGTGGTTGACGACCATATAGCACAAGATACTTTAATAAAGGAGCTCAACATGAGTAACC
TTCCTACCCTGAGCAAGAAGTTTATTGAGCTGCTTGAATTGCTGCAAAAGAATAACAAGGAGGACCAGGGTCAGGTCATC
ATTTTGTTCCAGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis