Browse Element(s) Details


Os.38243.1.S1_at

Description gb:AK099942.1
DB_XREF= gi:32985151
TID=Os.38243.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121N13, full insert sequence.
FL= gb:AK099942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5858011/11Metal tolerance protein C2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58540OsAffx.24924.1.S1_at11/112+35777415..35778267Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550Os.47401.1.A1_s_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550Os.18407.1.S1_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570Os.19421.1.S1_at11/112+35798862..35800671PRLI-interacting factor A, putative, expressed
LOC_Os02g58580Os.38243.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_s_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38243.1.S1_at--252--10391Chr02:35805826..35805850 (25 bp)
TTTTGGGAGCTTGTACCTGGTCACG
LOC_Os02g58580
Os.38243.1.S1_at--1105--10831Chr02:35805828..35805852 (25 bp)
TTGGGAGCTTGTACCTGGTCACGCT
LOC_Os02g58580
Os.38243.1.S1_at--962--3431Chr02:35806208..35806232 (25 bp)
CAGTCCGTGCTCGACTATGTGCATG
LOC_Os02g58580
Os.38243.1.S1_at--984--9271Chr02:35806211..35806235 (25 bp)
TCCGTGCTCGACTATGTGCATGGAT
LOC_Os02g58580
Os.38243.1.S1_at--766--7311Chr02:35806214..35806238 (25 bp)
GTGCTCGACTATGTGCATGGATTAT
LOC_Os02g58580
Os.38243.1.S1_at--869--9351Chr02:35806218..35806242 (25 bp)
TCGACTATGTGCATGGATTATATCA
LOC_Os02g58580
Os.38243.1.S1_at--470--5591Chr02:35806481..35806505 (25 bp)
GAAATTCGTTGACGATCTTCTCTCC
LOC_Os02g58580
Os.38243.1.S1_at--220--10591Chr02:35806498..35806522 (25 bp)
TTCTCTCCACTCGTCTTTTAAGATG
LOC_Os02g58580
Os.38243.1.S1_at--320--9491Chr02:35806501..35806525 (25 bp)
TCTCCACTCGTCTTTTAAGATGCTG
LOC_Os02g58580
Os.38243.1.S1_at--1074--3311Chr02:35806505..35806529 (25 bp)
CACTCGTCTTTTAAGATGCTGAGAA
LOC_Os02g58580
Os.38243.1.S1_at--394--1291Chr02:35806518..35806542 (25 bp)
AGATGCTGAGAATTATTGTTATTAT
LOC_Os02g58580
Target Sequence 
TTTTGGGAGCTTGTACCTGGTCACGCTNTTGGATCTCTCGACATCCGGGTGAAGAATGGTGGTGATTGCCAGTCCGTGCT
CGACTATGTGCATGGATTATATCAAGATTTGGGCATACAGGACCTGACCATCCNAACCGATGAATAAGGCATCATCTAGT
GTAGAAAGGAGTCATAGGGGAAAAAAGGATAGATCAAACTCTCNCAGTGTATTGCTTGGGCGTGCTTATNTGATAGTACG
GTATATCGCTTTGTACTCGACNNCTNCAGTTTGTACTCAGATTTACTCAGTAGCTACTACAATTTGTACTCACTTAAGCT
CGTTTGCTATGGCATCATGGTTGAAATTCGTTGACGATCTTCTCTCCACTCGTCTTTTAAGATGCTGAGAATTATTGTTA
TTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis