Browse Element(s) Details


OsAffx.12692.1.S1_at

Description tigr:9630.m05856
TID=OsAffx.12692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5863011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58580Os.38243.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_s_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12692.1.S1_at--536--1531Chr02:35828849..35828873 (25 bp)
AGCAGTGCAGGTATGCTTGTGAGTT
LOC_Os02g58630
OsAffx.12692.1.S1_at--1093--991Chr02:35828819..35828843 (25 bp)
AGGTTGATCTGGGATTACATTCAGC
LOC_Os02g58630
OsAffx.12692.1.S1_at--198--9891Chr02:35828804..35828828 (25 bp)
TACATTCAGCAATACTTCTCTCTCA
LOC_Os02g58630
OsAffx.12692.1.S1_at--968--9511Chr02:35828784..35828808 (25 bp)
TCTCATTTCCTGGTGAATTGGCAAT
LOC_Os02g58630
OsAffx.12692.1.S1_at--748--7071Chr02:35828772..35828796 (25 bp)
GTGAATTGGCAATCTATCCTAACTG
LOC_Os02g58630
OsAffx.12692.1.S1_at--525--5191Chr02:35828770..35828794 (25 bp)
GAATTGGCAATCTATCCTAACTGTT
LOC_Os02g58630
OsAffx.12692.1.S1_at--251--3071Chr02:35828762..35828786 (25 bp)
AATCTATCCTAACTGTTGCTGGTTT
LOC_Os02g58630
OsAffx.12692.1.S1_at--444--1971Chr02:35828751..35828775 (25 bp)
ACTGTTGCTGGTTTTCCTTCTCAGG
LOC_Os02g58630
OsAffx.12692.1.S1_at--202--9131Chr02:35828746..35828770 (25 bp)
TGCTGGTTTTCCTTCTCAGGTAAGA
LOC_Os02g58630
OsAffx.12692.1.S1_at--1110--7851Chr02:35828746..35828766 (21 bp)
GGTTTTCCTTCTCAGGTAAGAGCAC
LOC_Os02g58630
OsAffx.12692.1.S1_at--361--3652Chr09:10474883..10474903 (21 bp)
CTTCTCAGGTAAGAGCACCTTTCAT
NONE
Target Sequence 
AGCAGTGCAGGTATGCTTGTGAGTTGTGTCAGGTTGATCTGGGATTACATTCAGCAATACTTCTCTCTCATTTCCTGGTG
AATTGGCAATCTATCCTAACTGTTGCTGGTTTTCCTTCTCAGGTAAGAGCACCTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis