Browse Element(s) Details


Os.53860.1.S1_at

Description gb:AK100741.1
DB_XREF= gi:32985950
TID=Os.53860.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118E17, full insert sequence.
FL= gb:AK100741.1 gb:AK100456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5866011/11Sodium/hydrogen exchanger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein
LOC_Os02g58700Os.46995.1.S1_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58700Os.46995.1.S1_x_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g58720Os.47418.1.S1_a_at11/112+35869701..35871108Peroxidase 64 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53860.1.S1_at--644--9071Chr02:35844291..35844315 (25 bp)
TGCTTCAGCAGCACAGCGCGCATGT
LOC_Os02g58660
Os.53860.1.S1_at--85--3391Chr02:35844304..35844328 (25 bp)
CAGCGCGCATGTGCATCGCAGGATG
LOC_Os02g58660
Os.53860.1.S1_at--420--4131Chr02:35844392..35844416 (25 bp)
CCACCCTAGCTATATACTACTTCAT
LOC_Os02g58660
Os.53860.1.S1_at--1095--4331Chr02:35844435..35844459 (25 bp)
CCATGGCGCCATGCATAGAACAAAT
LOC_Os02g58660
Os.53860.1.S1_at--79--131Chr02:35844462..35844486 (25 bp)
ATTAAGAGGAGTACGTGTGGCACGC
LOC_Os02g58660
Os.53860.1.S1_at--184--8671Chr02:35844477..35844501 (25 bp)
TGTGGCACGCAATGGCTAGCTGGTT
LOC_Os02g58660
Os.53860.1.S1_at--892--8551Chr02:35844497..35844521 (25 bp)
TGGTTGGACTGGATCGACCTAGCTA
LOC_Os02g58660
Os.53860.1.S1_at--610--7911Chr02:35844533..35844557 (25 bp)
GGTTGACATTGCACCGATCGATCGA
LOC_Os02g58660
Os.53860.1.S1_at--482--6411Chr02:35844563..35844587 (25 bp)
GATCTGCATCTAATTGCCATGGGAA
LOC_Os02g58660
Os.53860.1.S1_at--169--2451Chr02:35844608..35844632 (25 bp)
AAAATCATATGCACCCGTGTCACGC
LOC_Os02g58660
Os.53860.1.S1_at--121--251Chr02:35844633..35844657 (25 bp)
ATATACGCCATGACCCCATGTGTGG
LOC_Os02g58660
Target Sequence 
TGCTTCAGCAGCACAGCGCGCATGTGCATCGCAGGATGAGGAGGTGGAATCCCAACATTCACATCACCACCACACCCTCG
TCGTCCGATCATCATAGCCACCCACCCTAGCTATATACTACTTCATCTCCGACGNCAACATCATCCATGGCGCCATGCAT
AGAACAAATTAATTAAGAGGAGTACGTGTGGCACGCAATGGCTAGCTGGTTGGACTGGATCGACCTAGCTAGAACGGGGC
CGGGTTGACATTGCACCGATCGATCGATCGATGATCTGCATCTAATTGCCATGGGAAATTCAGTTGGTTTTAGGGTNAAA
ATCATATGCACCCGTGTCACGCATATACGCCATGACCCCATGTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis