Browse Element(s) Details


Os.18354.1.S1_at

Description gb:AK061086.1
DB_XREF= gi:32971104
TID=Os.18354.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G05, full insert sequence.
FL= gb:AK061086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5867011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein
LOC_Os02g58700Os.46995.1.S1_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58700Os.46995.1.S1_x_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g58720Os.47418.1.S1_a_at11/112+35869701..35871108Peroxidase 64 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18354.1.S1_at--1123--9311Chr02:35848252..35848276 (25 bp)
TCGCCGGCTGGTGAATGAGAATCTC
LOC_Os02g58670
Os.18354.1.S1_at--1021--1391Chr02:35848039..35848063 (25 bp)
AGACGGAGATGGCTGCTCTGATCCA
LOC_Os02g58670
Os.18354.1.S1_at--256--3411Chr02:35848016..35848040 (25 bp)
CAGCAGCCTACCAACAAGCAGAGTT
LOC_Os02g58670
Os.18354.1.S1_at--933--1571Chr02:35847980..35848004 (25 bp)
AGCTCATCCACTTGATCAGAACGCA
LOC_Os02g58670
Os.18354.1.S1_at--615--1431Chr02:35847963..35847987 (25 bp)
AGAACGCAGCAGCTTAAGCCTTTAA
LOC_Os02g58670
Os.18354.1.S1_at--1122--1151Chr02:35847844..35847868 (25 bp)
AGTAACAACAACTCACTCTGATCCG
LOC_Os02g58670
Os.18354.1.S1_at--521--8491Chr02:35847813..35847837 (25 bp)
TGGCTTTCCATGCATTCCGGTAGTA
LOC_Os02g58670
Os.18354.1.S1_at--970--10771Chr02:35847773..35847797 (25 bp)
TTGTTACTGTGTCGATCATCCGCTA
LOC_Os02g58670
Os.18354.1.S1_at--26--631Chr02:35847729..35847753 (25 bp)
ATGCTTAATTGTTTGTGTCACCGGC
LOC_Os02g58670
Os.18354.1.S1_at--1139--7431Chr02:35847715..35847739 (25 bp)
GTGTCACCGGCTAACTTTTGCATAC
LOC_Os02g58670
Os.18354.1.S1_at--911--10711Chr02:35847698..35847722 (25 bp)
TTGCATACCCTTGTTTGCTTGCTTG
LOC_Os02g58670
Target Sequence 
TCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCACNTGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAG
CAGCCTACCAACAAGCAGAGTTCCCACCGANGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAAT
TAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAG
TCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCNGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATT
TTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCA
TACCCTTGTTTGCTTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis