Browse Element(s) Details


Os.17833.1.S1_at

Description gb:AK069209.1
DB_XREF= gi:32979233
TID=Os.17833.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full insert sequence.
FL= gb:AK069209.1 gb:AK102994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5864011/11Tumour susceptibility gene 101 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58580Os.38243.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_s_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17833.1.S1_at--554--9771Chr02:35831494..35831518 (25 bp)
TAATGATGGCCACGGACCTCATGGA
LOC_Os02g58640
Os.17833.1.S1_at--589--1291Chr02:35831383..35831407 (25 bp)
AGATGCTTGAGTGCACTGCTGCGGA
LOC_Os02g58640
Os.17833.1.S1_at--1011--4671Chr02:35831363..35831387 (25 bp)
GCGGATTTGGCACTCGAGGACACCA
LOC_Os02g58640
Os.17833.1.S1_at--154--6191Chr02:35831348..35831372 (25 bp)
GAGGACACCATTTATGCGCTTGACA
LOC_Os02g58640
Os.17833.1.S1_at--727--3591Chr02:35831319..35831343 (25 bp)
CATTCAGGAGGGTTCTGTGCCATTT
LOC_Os02g58640
Os.17833.1.S1_at--620--4911Chr02:35831268..35831292 (25 bp)
GCTTGCACGGGAGCAGTTTTTCCAA
LOC_Os02g58640
Os.17833.1.S1_at--928--2591Chr02:35831245..35831269 (25 bp)
AACGCGTCCTGTCAACCAAGGTGAA
LOC_Os02g58640
Os.17833.1.S1_at--259--10031Chr02:35831193..35831217 (25 bp)
TAGAATGGCTGCTCGGGCACCACAG
LOC_Os02g58640
Os.17833.1.S1_at--375--8831Chr02:35831123..35831147 (25 bp)
TGATATTGCCTTTGTCTACCAACTC
LOC_Os02g58640
Os.17833.1.S1_at--803--7031Chr02:35831080..35831104 (25 bp)
GTAAAGTTCGTTTGCTCTTTGCACA
LOC_Os02g58640
Os.17833.1.S1_at--290--1431Chr02:35830993..35831017 (25 bp)
AGAACCTTAGTTGGGAGTGCTGCAC
LOC_Os02g58640
Target Sequence 
TAATGATGGCCACGGACCTCATGGAGGCGTGGGTCATGGAGAACACCAAGGGTGCTGCCGGCGACACTGAAGCGGACGAG
GCAATTGAGACCGCAGATGTACTGTCTAAGCAGATGCTTGAGTGCACTGCTGCGGATTTGGCACTCGAGGACACCATTTA
TGCGCTTGACAAGGCCATTCAGGAGGGTTCTGTGCCATTTGATGGCTACCTCAGGAGCGTGCGNGCGCTTGCACGGGAGC
AGTTTTTCCAACGCGTCCTGTCAACCAAGGTGAACAAGGCACAACAACAGGCTCAGGTTGCTAGAATGGCTGCTCGGGCA
CCACAGTATGCATCATAGGACCGGTGAGGGGTAACTTGAGTATACTTACTTTGATATTGCCTTTGTCTACCAACTCTACT
ATAGCTGTCACAGTGTAAAGTTCGTTTGCTCTTTGCACATCTTTTTTGGGGTGGATGGGGGTTACTTACTAGATATTGGA
TGGATGATCCCATGTCAAATAAGAACCTTAGTTGGGAGTGCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis