Browse Element(s) Details


OsAffx.12693.1.S1_at

Description tigr:9630.m05862
TID=OsAffx.12693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5868011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein
LOC_Os02g58700Os.46995.1.S1_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58700Os.46995.1.S1_x_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g58720Os.47418.1.S1_a_at11/112+35869701..35871108Peroxidase 64 precursor, putative, expressed
LOC_Os02g58730Os.4376.1.S1_at11/112+35874978..35879805RAC-like GTP binding protein RHO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12693.1.S1_at--28--7411Chr02:35852301..35852325 (25 bp)
GTGATCAAGGAAGCACGTGCACGCG
LOC_Os02g58680
OsAffx.12693.1.S1_at--1109--6451Chr02:35852299..35852323 (25 bp)
GATCAAGGAAGCACGTGCACGCGAC
LOC_Os02g58680
OsAffx.12693.1.S1_at--833--9731Chr02:35852297..35852321 (25 bp)
TCAAGGAAGCACGTGCACGCGACAA
LOC_Os02g58680
OsAffx.12693.1.S1_at--370--2931Chr02:35852295..35852319 (25 bp)
AAGGAAGCACGTGCACGCGACAAGA
LOC_Os02g58680
OsAffx.12693.1.S1_at--326--951Chr02:35852294..35852318 (25 bp)
AGGAAGCACGTGCACGCGACAAGAA
LOC_Os02g58680
OsAffx.12693.1.S1_at--3--5391Chr02:35852292..35852316 (25 bp)
GAAGCACGTGCACGCGACAAGAAGA
LOC_Os02g58680
OsAffx.12693.1.S1_at--194--1451Chr02:35852270..35852294 (25 bp)
AGAAGCGCGGCGATAGGAAGAAACT
LOC_Os02g58680
OsAffx.12693.1.S1_at--636--2651Chr02:35852268..35852292 (25 bp)
AAGCGCGGCGATAGGAAGAAACTAG
LOC_Os02g58680
OsAffx.12693.1.S1_at--1030--4131Chr02:35852265..35852289 (25 bp)
CGCGGCGATAGGAAGAAACTAGAGA
LOC_Os02g58680
OsAffx.12693.1.S1_at--681--2751Chr02:35852238..35852262 (25 bp)
AAGAAATGGATGGACTACAACACAA
LOC_Os02g58680
OsAffx.12693.1.S1_at--404--5571Chr02:35852236..35852260 (25 bp)
GAAATGGATGGACTACAACACAAGG
LOC_Os02g58680
Target Sequence 
GTGATCAAGGAAGCACGTGCACGCGACAAGAAGAAGCGCGGCGATAGGAAGAAACTAGAGAAGAAGAAATGGATGGACTA
CAACACAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis