Browse Element(s) Details


Os.4376.1.S1_at

Description gb:AF218381.1
DB_XREF= gi:6822323
GEN=RACD
TID=Os.4376.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4376 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. japonica small GTP binding protein RACDP (RACD) mRNA, complete cds.
PROD=small GTP binding protein RACDP
FL= gb:AK067504.1 gb:AF218381.1 gb:AK067796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5873011/11RAC-like GTP binding protein RHO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein
LOC_Os02g58700Os.46995.1.S1_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58700Os.46995.1.S1_x_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g58720Os.47418.1.S1_a_at11/112+35869701..35871108Peroxidase 64 precursor, putative, expressed
LOC_Os02g58730Os.4376.1.S1_at11/112+35874978..35879805RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g58740Os.50023.1.S1_at11/112+35884564..35885576expressed protein
LOC_Os02g58740Os.50023.1.S1_x_at11/112+35884564..35885576expressed protein
LOC_Os02g58750OsAffx.12694.1.S1_at10/112+35887406..35889167hypothetical protein
LOC_Os02g58750Os.39421.1.S1_at3/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.20967.1.S1_x_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.30352.1.S1_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58760OsAffx.24927.1.S1_x_at11/112+35891145..35892771hypothetical protein
LOC_Os02g58760OsAffx.24927.2.S1_x_at5/112+35891145..35892771hypothetical protein
LOC_Os02g58770Os.40855.2.S1_x_at10/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.30352.2.S1_at7/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40855.4.S1_x_at4/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40360.1.S1_x_at1/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.3900.1.S1_at1/112+35895109..35905682retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009734biological_processauxin mediated signaling pathway
GO:0009738biological_processabscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0030833biological_processregulation of actin filament polymerization
GO:0030834biological_processregulation of actin filament depolymerization
GO:0040007biological_processgrowth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4376.1.S1_at--785--8591Chr02:35875928..35875952 (25 bp)
TGGTCGATGGGAGCACTGTGAACTT
LOC_Os02g58730
Os.4376.1.S1_at--425--6191Chr02:35876081..35876105 (25 bp)
GAGGACTACAATAGGCTACGCCCGT
LOC_Os02g58730
Os.4376.1.S1_at--774--10431Chr02:35876310..35876334 (25 bp)
TTATGCTCCTGGTGTGCCAATAATT
LOC_Os02g58730
Os.4376.1.S1_at--480--3131Chr02:35878566..35878590 (25 bp)
AATTTTTCGTAGATCACCCTGGTGC
LOC_Os02g58730
Os.4376.1.S1_at--242--8611Chr02:35878585..35878609 (25 bp)
TGGTGCTGTACCTATTTCCACTGCT
LOC_Os02g58730
Os.4376.1.S1_at--546--6191Chr02:35878710..35878734 (25 bp)
GAGGAAACTCATTGGTGCAGCGGCA
LOC_Os02g58730
Os.4376.1.S1_at--199--6351Chr02:35879300..35879324 (25 bp)
GATGCTGCGATTAAGGTGGTTCTCC
LOC_Os02g58730
Os.4376.1.S1_at--986--7331Chr02:35879403..35879427 (25 bp)
GTGCAGATCGATGTATCCCTTCATT
LOC_Os02g58730
Os.4376.1.S1_at--1052--8291Chr02:35879438..35879462 (25 bp)
GGCTTCAATCGTCGCTTGTTTGTAT
LOC_Os02g58730
Os.4376.1.S1_at--423--351Chr02:35879461..35879485 (25 bp)
ATAATTACGCTAGATGCCACCGGCA
LOC_Os02g58730
Os.4376.1.S1_at--982--6491Chr02:35879489..35879513 (25 bp)
GATATAATATAGTCCTCCTGCCTTT
LOC_Os02g58730
Target Sequence 
TGGTCGATGGGAGCACTGTGAACTTGGGGTTGTGGGATACAGCAGGACAAGAGGACTACAATAGGCTACGCCCGTTGAGC
TATCGTGGCGCTGATGTTTTCCTGCTGGCCTTTTCTCTGATCAGCAAAGCAAGCTATGAGAATGTTTCTAAAAAGTGGAT
ACCTGAATTAAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGATCTGCGGGATGATAAGCAAT
TTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCA
TACATTGAATGCAGTTCAAAAACACAGCAAAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCC
AAAGCAAAAGAAGAAGAAGAAAAAGGCGCAGAAAGGATGTGCCATCTTGTAATTAAATGGTAGACAGTGCAGTGCAGATC
GATGTATCCCTTCATTTGTAGCCTCTGGCTTCAATCGTCGCTTGTTTGTATAATTACGCTAGATGCCACCGGCAGAAGAT
ATAATATAGTCCTCCTGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis