Browse Element(s) Details


Os.50023.1.S1_at

Description gb:AK119712.1
DB_XREF= gi:37989335
TID=Os.50023.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-157-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F01, full insert sequence.
FL= gb:AK119712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5874011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58700Os.46995.1.S1_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58700Os.46995.1.S1_x_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g58720Os.47418.1.S1_a_at11/112+35869701..35871108Peroxidase 64 precursor, putative, expressed
LOC_Os02g58730Os.4376.1.S1_at11/112+35874978..35879805RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g58740Os.50023.1.S1_at11/112+35884564..35885576expressed protein
LOC_Os02g58740Os.50023.1.S1_x_at11/112+35884564..35885576expressed protein
LOC_Os02g58750OsAffx.12694.1.S1_at10/112+35887406..35889167hypothetical protein
LOC_Os02g58750Os.39421.1.S1_at3/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.20967.1.S1_x_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.30352.1.S1_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58760OsAffx.24927.1.S1_x_at11/112+35891145..35892771hypothetical protein
LOC_Os02g58760OsAffx.24927.2.S1_x_at5/112+35891145..35892771hypothetical protein
LOC_Os02g58770Os.40855.2.S1_x_at10/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.30352.2.S1_at7/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40855.4.S1_x_at4/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40360.1.S1_x_at1/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.3900.1.S1_at1/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.30352.3.S1_at6/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780Os.39421.1.S1_at5/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.30352.4.S1_at4/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.20967.1.S1_x_at1/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.30352.1.S1_at1/112+35908944..35915032retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50023.1.S1_at--536--2151Chr02:35884911..35884935 (25 bp)
ACAGCACCGCCGCTAGAGCGGTCAT
LOC_Os02g58740
Os.50023.1.S1_at--1032--9291Chr02:35884887..35884911 (25 bp)
TCCGCGGCAAGGAGCACACCCAGGT
LOC_Os02g58740
Os.50023.1.S1_at--653--1491Chr02:35884875..35884899 (25 bp)
AGCACACCCAGGTGGGCGCCGGGTT
LOC_Os02g58740
Os.50023.1.S1_at--923--1631Chr02:35884729..35884753 (25 bp)
AGCGTCCCTGACAACACTAGTCTCT
LOC_Os02g58740
Os.50023.1.S1_at--516--3791Chr02:35884645..35884669 (25 bp)
CTCCTCCCAGTACTACAAGTTTATT
LOC_Os02g58740
Os.50023.1.S1_at--169--10411Chr02:35884622..35884646 (25 bp)
TTATTAGTACTTACCGGTGTATCTC
LOC_Os02g58740
Os.50023.1.S1_at--650--1171Chr02:35884617..35884641 (25 bp)
AGTACTTACCGGTGTATCTCAGTGC
LOC_Os02g58740
Os.50023.1.S1_at--476--2051Chr02:35884614..35884638 (25 bp)
ACTTACCGGTGTATCTCAGTGCCTG
LOC_Os02g58740
Os.50023.1.S1_at--532--7751Chr02:35884607..35884631 (25 bp)
GGTGTATCTCAGTGCCTGCCGGTCT
LOC_Os02g58740
Os.50023.1.S1_at--892--9171Chr02:35884591..35884615 (25 bp)
TGCCGGTCTCGTTCCTTTTTCTGAT
LOC_Os02g58740
Os.50023.1.S1_at--161--3791Chr02:35884584..35884608 (25 bp)
CTCGTTCCTTTTTCTGATTCCGATT
LOC_Os02g58740
Target Sequence 
ACAGCACCGCCGCTAGAGCGGTCATCCGCGGCAAGGAGCACACCCAGGTGGGCGCCGGGTTCGACCGCGCGCACCGCCGC
GGGCCCTTCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCGCCAACTCCACCTTCCTGCTCGAGGCCGCCGGCAAGGGCGT
CCACCAGTCTCACGGCTGCTTCAGCGTCCCTGACAACACTAGTCTCTCTCTCTCCTGCAGCAGCGCCGCCGCCGCTGCTG
TGCCTTTGCTCTTCTTCATCCTCCTCCTCCTCCCAGTACTACAAGTTTATTATTAGTACTTACCGGTGTATCTCAGTGCC
TGCCGGTCTCGTTCCTTTTTCTGATTCCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis