Browse Element(s) Details


OsAffx.30352.4.S1_at

Description tigr:9637.m02394
TID=OsAffx.30352.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g273109/11hypothetical protein
LOC_Os02g587804/11retrotransposon protein, putative, unclassified
LOC_Os04g454201/11retrotransposon protein, putative, unclassified
LOC_Os04g453801/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27270NANA9+16579415..16579891RRNA methyltransferase 3, putative
LOC_Os09g27280OsAffx.30053.1.S1_at11/119+16587442..16587808hypothetical protein
LOC_Os09g27290OsAffx.24927.1.S1_x_at11/119+16590747..16592595hypothetical protein
LOC_Os09g27290OsAffx.24927.2.S1_x_at4/119+16590747..16592595hypothetical protein
LOC_Os09g27300OsAffx.30352.2.S1_at8/119+16594235..16601906retrotransposon protein, putative, unclassified
LOC_Os09g27310OsAffx.30352.4.S1_at9/119+16602552..16605767hypothetical protein
LOC_Os09g27310Os.39421.1.S1_at5/119+16602552..16605767hypothetical protein
LOC_Os09g27310OsAffx.20967.1.S1_x_at1/119+16602552..16605767hypothetical protein
LOC_Os09g27320NANA9+16609314..16610273hypothetical protein
LOC_Os09g27330Os.55306.1.S1_at11/119+16617064..16617782expressed protein
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30352.4.S1_at--457--4792Chr09:16603700..16603724 (25 bp)
GCTCCTCGAGGCGAAGACTTACGAC
LOC_Os09g27310
OsAffx.30352.4.S1_at--508--5673Chr04:26652101..26652120 (20 bp)
GACTTACGACAAGAACTTCATGGAG
LOC_Os04g45420
OsAffx.30352.4.S1_at--499--1071Chr09:16602983..16603007 (25 bp)
AGGGAGCAGACGTTAACTCAATCTC
LOC_Os09g27310
OsAffx.30352.4.S1_at--929--1511Chr09:16602979..16603003 (25 bp)
AGCAGACGTTAACTCAATCTCGCCA
LOC_Os09g27310
OsAffx.30352.4.S1_at--208--1891Chr09:16602974..16602998 (25 bp)
ACGTTAACTCAATCTCGCCACGTAA
LOC_Os09g27310
OsAffx.30352.4.S1_at--833--10471Chr09:16602971..16602995 (25 bp)
TTAACTCAATCTCGCCACGTAACCA
LOC_Os09g27310
OsAffx.30352.4.S1_at--979--8191Chr09:16602928..16602952 (25 bp)
GGCAAGTTCAAGCTACCTTGGGCAC
LOC_Os09g27310
OsAffx.30352.4.S1_at--932--1212Chr09:16602924..16602948 (25 bp)
AGTTCAAGCTACCTTGGGCACGTCG
LOC_Os09g27310
OsAffx.30352.4.S1_at--1020--7591NONE
GGGCACGTCGCCATCAACATTAGAA
NONE
OsAffx.30352.4.S1_at--856--1892Chr09:16602773..16602929 (25 bp)
ACGTCGCCATCAACATTAGAATCAT
LOC_Os09g27310
OsAffx.30352.4.S1_at--154--3591Chr09:16602760..16602813 (25 bp)
CATTAGAATCATCCTCTATGCCTCC
LOC_Os09g27310
Target Sequence 
GCTCCTCGAGGCGAAGACTTACGACAAGAACTTCATGGAGAAGTGCATCAAGAAGATGAAAGGATCGTGTTCCGTATCTC
CCCCAGTTTGGAGAGGGATGCGAGGTATAACTACCTTATAGCTCGTCTAACTCCAAAACCCCGGAGAACACAAGACGTTG
CTGACAAGAATAGGGAGCAGACGTTAACTCAATCTCGCCACGTAACCATCCTGCAGCGAGGGAAGGGGCAAGTTCAAGCT
ACCTTGGGCACGTCGCCATCAACATTAGAATCATCCTCTATGCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30352.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis