Browse Element(s) Details


OsAffx.17930.1.S1_at

Description tigr:9637.m02399
TID=OsAffx.17930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2736011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27310OsAffx.30352.4.S1_at9/119+16602552..16605767hypothetical protein
LOC_Os09g27310Os.39421.1.S1_at5/119+16602552..16605767hypothetical protein
LOC_Os09g27310OsAffx.20967.1.S1_x_at1/119+16602552..16605767hypothetical protein
LOC_Os09g27320NANA9+16609314..16610273hypothetical protein
LOC_Os09g27330Os.55306.1.S1_at11/119+16617064..16617782expressed protein
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17930.1.S1_at--132--7691Chr09:16630118..16630142 (25 bp)
GGGTCCGACCGAGATATCTGCAGAA
LOC_Os09g27360
OsAffx.17930.1.S1_at--655--10151Chr09:16630132..16630156 (25 bp)
TATCTGCAGAAATCACAACACCGAA
LOC_Os09g27360
OsAffx.17930.1.S1_at--706--631Chr09:16630148..16630172 (25 bp)
AACACCGAACAGATTAATGGGAAGG
LOC_Os09g27360
OsAffx.17930.1.S1_at--129--2271Chr09:16630177..16630201 (25 bp)
AAATCACCCCATGGGTTCTGAGATG
LOC_Os09g27360
OsAffx.17930.1.S1_at--918--9551Chr09:16630273..16630297 (25 bp)
TCTTCTTTTTCGTGGGCGCTCCGGA
LOC_Os09g27360
OsAffx.17930.1.S1_at--120--4811Chr09:16630455..16630479 (25 bp)
GCTCTTTCGCTTCCGGCTGACATGG
LOC_Os09g27360
OsAffx.17930.1.S1_at--760--1911Chr09:16630485..16630509 (25 bp)
ACGGGACAGAGAGGCTCCACTCCGG
LOC_Os09g27360
OsAffx.17930.1.S1_at--708--8311Chr09:16630497..16630521 (25 bp)
GGCTCCACTCCGGTCTGGAAGGTTT
LOC_Os09g27360
OsAffx.17930.1.S1_at--374--3331Chr09:16630502..16630526 (25 bp)
CACTCCGGTCTGGAAGGTTTCTGTT
LOC_Os09g27360
OsAffx.17930.1.S1_at--32--10391Chr09:16630528..16630552 (25 bp)
TTTTCCCCTTTCTGCAGAGTCTACT
LOC_Os09g27360
OsAffx.17930.1.S1_at--1043--3671Chr09:16630535..16630559 (25 bp)
CTTTCTGCAGAGTCTACTTCTACCT
LOC_Os09g27360
Target Sequence 
GGGTCCGACCGAGATATCTGCAGAAATCACAACACCGAACAGATTAATGGGAAGGAACCAAATCACCCCATGGGTTCTGA
GATGGGGAGGGGAGCGAACCGGGTCGCGGAGGACGGGCTTGGTGTCGTCGGCGACGGGGCGGAACGGCGGCTTCTTCTTC
TTTTTCGTGGGCGCTCCGGAGGAGGAGGACGGGGTCCTACCCGCGCTGGTGGTGGTGGTGACAGCGGCGGAGGAGGAGGA
GAGGATTGAGCCGGAGAGGATTGAGCCGGAGAGGATTGAGCCGGAGGCGGAGAAGAAGGCCCCCGACACCGGCGAGGGGC
TCGCGAAGGCGGCGTGGGCTCTTTCGCTTCCGGCTGACATGGCCGCCACGGGACAGAGAGGCTCCACTCCGGTCTGGAAG
GTTTCTGTTTTTTTCCCCTTTCTGCAGAGTCTACTTCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis