Browse Element(s) Details


OsAffx.30055.1.S1_at

Description tigr:9637.m02401
TID=OsAffx.30055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2738011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27330Os.55306.1.S1_at11/119+16617064..16617782expressed protein
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed
LOC_Os09g27430OsAffx.6415.1.S1_at11/119+16658578..16659351hypothetical protein
LOC_Os09g27440OsAffx.17932.1.S1_at11/119+16659907..16660425hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30055.1.S1_at--1126--4351Chr09:16639111..16639135 (25 bp)
CCACCTCTTCGTCGGCTATGGCTGT
LOC_Os09g27380
OsAffx.30055.1.S1_at--1102--8291Chr09:16639124..16639148 (25 bp)
GGCTATGGCTGTCCCGTACTTCTGC
LOC_Os09g27380
OsAffx.30055.1.S1_at--956--1771Chr09:16639376..16639400 (25 bp)
ACCGTATGGACCGTCGCAAAGCAGA
LOC_Os09g27380
OsAffx.30055.1.S1_at--417--1771Chr09:16639385..16639409 (25 bp)
ACCGTCGCAAAGCAGACCGGGCTGA
LOC_Os09g27380
OsAffx.30055.1.S1_at--33--9431Chr09:16639527..16639551 (25 bp)
TCGTGCAGTGGCTATCGCGGCGCAA
LOC_Os09g27380
OsAffx.30055.1.S1_at--570--4611Chr09:16639575..16639599 (25 bp)
GCGTCCCGTTGTTCCCCGATCATGG
LOC_Os09g27380
OsAffx.30055.1.S1_at--671--1851Chr09:16639632..16639656 (25 bp)
ACGAAGAAGAGATCGCGCCATCGCC
LOC_Os09g27380
OsAffx.30055.1.S1_at--828--5891Chr09:16639723..16639747 (25 bp)
GAGCTGGATCGGAAGAATCTGCCGC
LOC_Os09g27380
OsAffx.30055.1.S1_at--742--2731Chr09:16639735..16639759 (25 bp)
AAGAATCTGCCGCAGGTTGCTTGGC
LOC_Os09g27380
OsAffx.30055.1.S1_at--980--991Chr09:16639748..16639772 (25 bp)
AGGTTGCTTGGCTACACGGAAACGA
LOC_Os09g27380
OsAffx.30055.1.S1_at--1051--8151Chr09:16639765..16639789 (25 bp)
GGAAACGAGCCACCCGCGTCAACTG
LOC_Os09g27380
Target Sequence 
CCACCTCTTCGTCGGCTATGGCTGTCCCGTACTTCTGCCGCAAGCACGTCGCTCTGGCCACCTCGCGTTCCTCCACCGTA
TGGACCGTCGCAAAGCAGACCGGGCTGAGGAGCGTCACCGTCGGCTCCGACACCGCGGTGGCCTGCGCCGTCTGCACCGA
CGACCTCCCGCCGGCGGCGACCGCGTGCCGGCTACCCTGCGGCCACCTGTACCACGCCGACTGCTTCGTGCAGTGGCTAT
CGCGGCGCAACTCCTGCCCGGTCTGCCGCCGCCGCGTCCCGTTGTTCCCCGATCATGGCGCCGCCTACACCGACGAAGAC
GAAGACGAAGACGAAGAAGAGATCGCGCCATCGCCGCCGCCGCCTCATGGTCCGGAGACGACGGCGACCGACGACCACCG
GCCGCGGTCTCTGCCGGGAGCGAGCTGGATCGGAAGAATCTGCCGCAGGTTGCTTGGCTACACGGAAACGAGCCACCCGC
GTCAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis