Browse Element(s) Details


OsAffx.30057.1.S1_at

Description tigr:9637.m02403
TID=OsAffx.30057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2740010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed
LOC_Os09g27430OsAffx.6415.1.S1_at11/119+16658578..16659351hypothetical protein
LOC_Os09g27440OsAffx.17932.1.S1_at11/119+16659907..16660425hypothetical protein
LOC_Os09g27450OsAffx.17933.1.S1_at11/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27450Os.49759.1.S1_x_at10/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30057.1.S1_at--840--2451NONE
AACAATCAGATCAACCGCCTCGTCG
NONE
OsAffx.30057.1.S1_at--254--871Chr09:16648125..16648149 (25 bp)
ATGGCGGCGCGGTCTCCTCAGTACG
LOC_Os09g27400
OsAffx.30057.1.S1_at--511--7791Chr09:16648115..16648139 (25 bp)
GGTCTCCTCAGTACGCATCGGGACG
LOC_Os09g27400
OsAffx.30057.1.S1_at--811--9251Chr09:16648111..16648135 (25 bp)
TCCTCAGTACGCATCGGGACGCTGC
LOC_Os09g27400
OsAffx.30057.1.S1_at--1060--1771Chr09:16648078..16648102 (25 bp)
ACCGGGCAGGTGTTTCGCAGCGACA
LOC_Os09g27400
OsAffx.30057.1.S1_at--436--1651Chr09:16648060..16648084 (25 bp)
AGCGACAGCCACTGCGCGATGCAGT
LOC_Os09g27400
OsAffx.30057.1.S1_at--643--7191Chr09:16647938..16647962 (25 bp)
GTCGGAGACGGTGACAGTGATCACC
LOC_Os09g27400
OsAffx.30057.1.S1_at--514--7371Chr09:16647928..16647952 (25 bp)
GTGACAGTGATCACCGTGGCCAGCG
LOC_Os09g27400
OsAffx.30057.1.S1_at--927--8453Chr09:16647912..16647936 (25 bp)
TGGCCAGCGCCGGTCGAGACGACGA
LOC_Os09g27400
OsAffx.30057.1.S1_at--718--4071Chr09:16647898..16647922 (25 bp)
CGAGACGACGATGGGCCTGACACGA
LOC_Os09g27400
OsAffx.30057.1.S1_at--374--7991Chr09:16647861..16647885 (25 bp)
GGATGGAAGACGTCGGTGGACCACC
LOC_Os09g27400
Target Sequence 
AACAATCAGATCAACCGCCTCGTCGTCGTCGGCGGCGGCGATGGCACGGCCTCTTGGTCGGTCTCCGTCGGCGGCGACCA
TGGCGGCGCGGTCTCCTCAGTACGCATCGGGACGCTGCGGCGGCAGACCGGGCAGGTGTTTCGCAGCGACAGCCACTGCG
CGATGCAGTGGGCGTGGTACAGGTGGCCGCACGGGAGCCTGGACGCCGGCGACGCGAGCTGGAGGGCGTCGGTGCAGACG
GCGCAGGCCGCCGCCGCCGCCGCGTCGTCGGAGACGGTGACAGTGATCACCGTGGCCAGCGCCGGTCGAGACGACGATGG
GCCTGACACGAAGGAGGAGTCGTGGATGGAAGACGTCGGTGGACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis