Browse Element(s) Details


OsAffx.31213.2.S1_at

Description tigr:9637.m02398
TID=OsAffx.31213.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cdc2-like serinethreonine-protein kinase crp (ec 2.7.1.-), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2735011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27300OsAffx.30352.2.S1_at8/119+16594235..16601906retrotransposon protein, putative, unclassified
LOC_Os09g27310OsAffx.30352.4.S1_at9/119+16602552..16605767hypothetical protein
LOC_Os09g27310Os.39421.1.S1_at5/119+16602552..16605767hypothetical protein
LOC_Os09g27310OsAffx.20967.1.S1_x_at1/119+16602552..16605767hypothetical protein
LOC_Os09g27320NANA9+16609314..16610273hypothetical protein
LOC_Os09g27330Os.55306.1.S1_at11/119+16617064..16617782expressed protein
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31213.2.S1_at--1087--1851Chr09:16627003..16627027 (25 bp)
ACGAGCGACCAGCTGTACCAGATCT
LOC_Os09g27350
OsAffx.31213.2.S1_at--559--8751Chr09:16627016..16627040 (25 bp)
TGTACCAGATCTTCGACATGCTCGG
LOC_Os09g27350
OsAffx.31213.2.S1_at--970--2451Chr09:16627051..16627075 (25 bp)
AACAAGACACGCGAGGCCTTCAAGT
LOC_Os09g27350
OsAffx.31213.2.S1_at--238--2851Chr09:16627078..16627102 (25 bp)
AAGTCCGAGCTCCTAGCCTACGAGG
LOC_Os09g27350
OsAffx.31213.2.S1_at--560--9991Chr09:16627091..16627115 (25 bp)
TAGCCTACGAGGTCCGGCGATGGCA
LOC_Os09g27350
OsAffx.31213.2.S1_at--309--5911Chr09:16627165..16627189 (25 bp)
GAGCTCTTCCCGGAGAAGTTGCTGT
LOC_Os09g27350
OsAffx.31213.2.S1_at--879--10572Chr10:18096171..18096195 (25 bp)
TTCTCACGTTCGATCCCGGCGAGAG
NONE
OsAffx.31213.2.S1_at--1157--1591Chr09:16627287..16627311 (25 bp)
AGCTGACGCTGATGAGTCCGGCGTC
LOC_Os09g27350
OsAffx.31213.2.S1_at--928--4211Chr09:16627313..16627337 (25 bp)
CCGCGTTGCTCAGGAAGACGGCATC
LOC_Os09g27350
OsAffx.31213.2.S1_at--462--511Chr09:16627335..16627359 (25 bp)
ATCGATAGTAGCTGGTGCGGTCATC
LOC_Os09g27350
OsAffx.31213.2.S1_at--1045--8511Chr09:16627377..16627401 (25 bp)
TGGAACTTGGATGATACCTTGGTGC
LOC_Os09g27350
Target Sequence 
ACGAGCGACCAGCTGTACCAGATCTTCGACATGCTCGGCGTCCCGGGGAACAAGACACGCGAGGCCTTCAAGTCCAAGTC
CGAGCTCCTAGCCTACGAGGTCCGGCGATGGCAAGCGCTGCGGCGGCCGCAGCCGGAGCAGGAGGCGCGCGGCTGGCTGC
CCGAGCTCTTCCCGGAGAAGTTGCTGTCGCGGGACGGGTTCGACGTCCTGAGGGGGCTTCTCACGTTCGATCCCGGCGAG
AGGCTGACCGCCGCCGCCGCGCTCAGGCATCGGTGGTTCGCCGGAGCTGACGCTGATGAGTCCGGCGTCGCCGCGTTGCT
CAGGAAGACGGCATCGATAGTAGCTGGTGCGGTCATCAGTGCTGGGGCATTTGTTGGAACTTGGATGATACCTTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31213.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis