Browse Element(s) Details


Os.55306.1.S1_at

Description gb:AK107839.1
DB_XREF= gi:32993048
TID=Os.55306.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-H08, full insert sequence.
FL= gb:AK107839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2733011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27290OsAffx.24927.1.S1_x_at11/119+16590747..16592595hypothetical protein
LOC_Os09g27290OsAffx.24927.2.S1_x_at4/119+16590747..16592595hypothetical protein
LOC_Os09g27300OsAffx.30352.2.S1_at8/119+16594235..16601906retrotransposon protein, putative, unclassified
LOC_Os09g27310OsAffx.30352.4.S1_at9/119+16602552..16605767hypothetical protein
LOC_Os09g27310Os.39421.1.S1_at5/119+16602552..16605767hypothetical protein
LOC_Os09g27310OsAffx.20967.1.S1_x_at1/119+16602552..16605767hypothetical protein
LOC_Os09g27320NANA9+16609314..16610273hypothetical protein
LOC_Os09g27330Os.55306.1.S1_at11/119+16617064..16617782expressed protein
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55306.1.S1_at--1136--9391Chr09:16617465..16617489 (25 bp)
TCGTCATGGTGTCCTACCAGTCCAA
LOC_Os09g27330
Os.55306.1.S1_at--8--1711Chr09:16617480..16617504 (25 bp)
ACCAGTCCAACTTCCGCGACAGGTG
LOC_Os09g27330
Os.55306.1.S1_at--85--6671Chr09:16617573..16617597 (25 bp)
GTTGCAAACATACTTCTGATAATTG
LOC_Os09g27330
Os.55306.1.S1_at--550--1191Chr09:16617599..16617623 (25 bp)
AGTAGTATGACATTGCCAGCGACAC
LOC_Os09g27330
Os.55306.1.S1_at--368--10691Chr09:16617611..16617635 (25 bp)
TTGCCAGCGACACGATGATGCGATC
LOC_Os09g27330
Os.55306.1.S1_at--1064--8852Chr09:16617626..16617650 (25 bp)
TGATGCGATCGAGTGGTGTTCTTGA
LOC_Os09g27330
Os.55306.1.S1_at--1058--7031Chr09:16617690..16617714 (25 bp)
GTAAAAGTGTAATTTATCGCCTTGA
LOC_Os09g27330
Os.55306.1.S1_at--916--10131Chr09:16617704..16617728 (25 bp)
TATCGCCTTGAAAAATACATGTCTG
LOC_Os09g27330
Os.55306.1.S1_at--425--2451Chr09:16617715..16617739 (25 bp)
AAAATACATGTCTGCCACTCTGTCG
LOC_Os09g27330
Os.55306.1.S1_at--1011--9191Chr09:16617727..16617751 (25 bp)
TGCCACTCTGTCGATTGCCAAATTC
LOC_Os09g27330
Os.55306.1.S1_at--659--7191Chr09:16617736..16617760 (25 bp)
GTCGATTGCCAAATTCAATGGGAAC
LOC_Os09g27330
Target Sequence 
TCGTCATGGTGTCCTACCAGTCCAACTTCCGCGACAGGTGGTTCCCCCTCGTCAGCCGGTGACCGGCCGACCAACGCCGC
CATGGACGCCATGAGAGATTGAGGCAAAGTTGCAAACATACTTCTGATAATTGCAGTAGTATGACATTGCCAGCGACACG
ATGATGCGATCGAGTGGTGTTCTTGATGGTTTTTTTTTTTGTTTTGTTTCTGCTCCTTTTGTCCATGTAAAAGTGTAATT
TATCGCCTTGAAAAATACATGTCTGCCACTCTGTCGATTGCCAAATTCAATGGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis