Browse Element(s) Details


Os.47418.1.S1_a_at

Description gb:AK099584.1
DB_XREF= gi:32984793
TID=Os.47418.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.47418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042D08, full insert sequence.
FL= gb:AK060083.1 gb:AK099584.1 gb:AK106092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5872011/11Peroxidase 64 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein
LOC_Os02g58700Os.46995.1.S1_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58700Os.46995.1.S1_x_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g58720Os.47418.1.S1_a_at11/112+35869701..35871108Peroxidase 64 precursor, putative, expressed
LOC_Os02g58730Os.4376.1.S1_at11/112+35874978..35879805RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g58740Os.50023.1.S1_at11/112+35884564..35885576expressed protein
LOC_Os02g58740Os.50023.1.S1_x_at11/112+35884564..35885576expressed protein
LOC_Os02g58750OsAffx.12694.1.S1_at10/112+35887406..35889167hypothetical protein
LOC_Os02g58750Os.39421.1.S1_at3/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.20967.1.S1_x_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.30352.1.S1_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58760OsAffx.24927.1.S1_x_at11/112+35891145..35892771hypothetical protein
LOC_Os02g58760OsAffx.24927.2.S1_x_at5/112+35891145..35892771hypothetical protein
LOC_Os02g58770Os.40855.2.S1_x_at10/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.30352.2.S1_at7/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40855.4.S1_x_at4/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40360.1.S1_x_at1/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.3900.1.S1_at1/112+35895109..35905682retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47418.1.S1_a_at--680--4351Chr02:35870510..35870534 (25 bp)
CCAGCTGAAGCAGGCGTTCCACGGG
LOC_Os02g58720
Os.47418.1.S1_a_at--1005--7691Chr02:35870573..35870597 (25 bp)
GGGTCACACGCTTGGCTTCGCACAC
LOC_Os02g58720
Os.47418.1.S1_a_at--1080--5611Chr02:35870745..35870769 (25 bp)
GACAACTTCTACTATCGGATGCTGC
LOC_Os02g58720
Os.47418.1.S1_a_at--194--10631Chr02:35870877..35870901 (25 bp)
TTCGTCGACTCCATGCTACGGATGA
LOC_Os02g58720
Os.47418.1.S1_a_at--932--9051Chr02:35870890..35870914 (25 bp)
TGCTACGGATGAGCTCCCTCAACAA
LOC_Os02g58720
Os.47418.1.S1_a_at--917--1031Chr02:35870926..35870950 (25 bp)
AGGTCCGAGCCAACTGCAGGCGCGT
LOC_Os02g58720
Os.47418.1.S1_a_at--470--5011Chr02:35870941..35870965 (25 bp)
GCAGGCGCGTCAACTAGCTAGCTAT
LOC_Os02g58720
Os.47418.1.S1_a_at--953--371Chr02:35870985..35871009 (25 bp)
ATCACACTATCTTATCTTATCCACC
LOC_Os02g58720
Os.47418.1.S1_a_at--988--3831Chr02:35871019..35871043 (25 bp)
CTGCACTGCATGTATGGCCTCAACT
LOC_Os02g58720
Os.47418.1.S1_a_at--1077--2531Chr02:35871040..35871064 (25 bp)
AACTCAACTCAACTTATGTACAACA
LOC_Os02g58720
Os.47418.1.S1_a_at--592--351Chr02:35871070..35871094 (25 bp)
ATAACGTCGAATGGCTATAGCATCT
LOC_Os02g58720
Target Sequence 
CCAGCTGAAGCAGGCGTTCCACGGGCGCGGGATGTCGACCAAGGACCTGGTGGTGCTGTCGGGGGGTCACACGCTTGGCT
TCGCACACTGCTCCTCCTTCCAGAACCGCATCCAGCCGCAGGGCGTCGACCCCGCGCTTCACCCCTCCTTCGCCGCCACC
CTCCGCCGCTCCTGCCCACCCAACAACACCGCCAGGTCTGCCGGCTCCTCCCTCGACCCCACCTCCTCCGCCTTCGACAA
CTTCTACTATCGGATGCTGCTCTCCGGCCGTGGCCTTCTCTCCTCCGACGAGGCGCTGCTCACCCACCCCAAGACGCGCG
CCCAGGTCACGCTNTACGCCGCGTCGCAGCCCGCCTTCTTCCGTGACTTCGTCGACTCCATGCTACGGATGAGCTCCCTC
AACAACGTCGCCGGCGAGGTCCGAGCCAACTGCAGGCGCGTCAACTAGCTAGCTATTTCCACTAGCATCATATCGATCAC
ACTATCTTATCTTATCCACCACACCATCCCTGCACTGCATGTATGGCCTCAACTCAACTCAACTTATGTACAACAACAAT
ATAACGTCGAATGGCTATAGCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47418.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis