Browse Element(s) Details


Os.5975.1.S2_at

Description gb:AK105388.1
DB_XREF= gi:32990597
TID=Os.5975.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H12, full insert sequence.
FL= gb:AK105388.1 gb:AK063696.1 gb:AK073112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5865011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed
LOC_Os02g58680OsAffx.12693.1.S1_at11/112+35851636..35852414hypothetical protein
LOC_Os02g58690NANA2+35853219..35855855hypothetical protein
LOC_Os02g58700Os.46995.1.S1_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58700Os.46995.1.S1_x_at2/112+35857810..35860669retrotransposon protein, putative, unclassified
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5975.1.S2_at--335--6591Chr02:35834738..35834762 (25 bp)
GATTGTTGGCTACAGCATGCGCAAT
LOC_Os02g58650
Os.5975.1.S2_at--1002--2331Chr02:35834691..35834715 (25 bp)
AAAGAGTATTGGGTGCTGCCCCAAA
LOC_Os02g58650
Os.5975.1.S2_at--809--3051Chr02:35834587..35834611 (25 bp)
AATCTAGGGTTACTGGCCGGCCAAG
LOC_Os02g58650
Os.5975.1.S2_at--381--6471Chr02:35834563..35834587 (25 bp)
GATAACTGTATTTGCGTGGTCATAT
LOC_Os02g58650
Os.5975.1.S2_at--903--6331Chr02:35834470..35834494 (25 bp)
GATGCTAGGCATAGCCATTTCTGAT
LOC_Os02g58650
Os.5975.1.S2_at--543--1691Chr02:35834458..35834482 (25 bp)
AGCCATTTCTGATATATTTCTCGGG
LOC_Os02g58650
Os.5975.1.S2_at--1144--10011Chr02:35834402..35834426 (25 bp)
TAGAACGGGACCTGATGCTGTAGTT
LOC_Os02g58650
Os.5975.1.S2_at--389--6351Chr02:35834389..35834413 (25 bp)
GATGCTGTAGTTTTGCAACCTGACT
LOC_Os02g58650
Os.5975.1.S2_at--1009--9711Chr02:35834346..35834370 (25 bp)
TCAAGGCAACTCATATTACCATATT
LOC_Os02g58650
Os.5975.1.S2_at--413--51Chr02:35834324..35834348 (25 bp)
ATTGTACTCCCATGTTGTATGTCTA
LOC_Os02g58650
Os.5975.1.S2_at--1006--6911Chr02:35834308..35834332 (25 bp)
GTATGTCTAGTTCACCAATCAAGTT
LOC_Os02g58650
Target Sequence 
GATTGTTGGCTACAGCATGCGCAATATTGAAGTNCGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGG
AATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGCNGTAAGAGTGGGGAAGTGATGATTAGTNAAAATCTAGG
GTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGAC
ACCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGAC
GAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAACCTGACTATTGTTGGTAAAATACAATCAAGGC
AACTCATATTACCATATTGTACTCCCATGTTGTATGTCTAGTTCACCAATCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5975.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis