Browse Element(s) Details


Os.54945.1.S1_at

Description gb:AK107147.1
DB_XREF= gi:32992356
TID=Os.54945.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D10, full insert sequence.
FL= gb:AK107147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5861011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570Os.19421.1.S1_at11/112+35798862..35800671PRLI-interacting factor A, putative, expressed
LOC_Os02g58580Os.38243.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_s_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54945.1.S1_at--998--4531Chr02:35816515..35816539 (25 bp)
GCCCGACTACGCCATGAGCGGCAAG
LOC_Os02g58610
Os.54945.1.S1_at--207--8231Chr02:35816534..35816558 (25 bp)
GGCAAGCTCAACGTCAAGTCCGACG
LOC_Os02g58610
Os.54945.1.S1_at--441--3791Chr02:35816582..35816606 (25 bp)
CTCGAGCTCATCACTGGACGCAGGG
LOC_Os02g58610
Os.54945.1.S1_at--13--9451Chr02:35816630..35816654 (25 bp)
TCGGAGTCGGAGGACCACCAGCGCT
LOC_Os02g58610
Os.54945.1.S1_at--525--5811Chr02:35816696..35816720 (25 bp)
GACCGCAAGAGGTGCTTCGCCCTGG
LOC_Os02g58610
Os.54945.1.S1_at--767--5371Chr02:35816876..35816900 (25 bp)
GAAGACAAGCAAAGAGCCACCACCA
LOC_Os02g58610
Os.54945.1.S1_at--1034--9211Chr02:35816934..35816958 (25 bp)
TCCATCTGCTCATTCTAGCTACTAG
LOC_Os02g58610
Os.54945.1.S1_at--1160--9991Chr02:35816949..35816973 (25 bp)
TAGCTACTAGTTGCCTAGCTCTCTC
LOC_Os02g58610
Os.54945.1.S1_at--341--3771Chr02:35816983..35817007 (25 bp)
CTCTCTTGGTTGGATTCCCATGTTA
LOC_Os02g58610
Os.54945.1.S1_at--148--891Chr02:35817027..35817051 (25 bp)
AGGCCATGGGTGATTTCACTGATTG
LOC_Os02g58610
Os.54945.1.S1_at--1112--3551Chr02:35817057..35817081 (25 bp)
CATCATTTTCTTAGTTGCTCTTCAT
LOC_Os02g58610
Target Sequence 
GCCCGACTACGCCATGAGCGGCAAGCTCAACGTCAAGTCCGACGTCTACAGCTTCGGCGTCGTGCTCCTCGAGCTCATCA
CTGGACGCAGGGCCTTCGACGCCGCCTCCTCCGACTCGGAGTCGGAGGACCACCAGCGCTTCCTCCTCCTCCGGGACTGG
GCGCGCCCCTACCTCGCCGGCGACCGCAAGAGGTGCTTCGCCCTGGCCGACCCGGCGTTGCAGGGCCGCTACCCCCGCCG
CGCCTTCTACCAGCTCGCCGTCGTCGCCTCGCTCTGCCTCCGCGACAACCCCAACCTCCGCCCCTCCATGACAGACGTCA
CCCGAGCCCTCGACCACGTCGCCTCCCAGTCCCAGCCATGGGAAGACAAGCAAAGAGCCACCACCACCACGCCTCCTCCC
AACTCCCAACCTTAATTCCTCCATCTGCTCATTCTAGCTACTAGTTGCCTAGCTCTCTCTCTCTCTCTCTCTCTTGGTTG
GATTCCCATGTTATGTTCCCCCTTAATTTGGAAGGCCATGGGTGATTTCACTGATTGATTTTCATCATTTTCTTAGTTGC
TCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis