Browse Element(s) Details


OsAffx.31574.1.S1_at

Description tigr:9640.m00345
TID=OsAffx.31574.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g043009/11Sulfotransferase domain containing protein
LOC_Os11g045308/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein
LOC_Os12g04330OsAffx.7481.1.S1_at11/1112+1833700..1834413hypothetical protein
LOC_Os12g04340OsAffx.19485.2.S1_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.19485.1.S1_s_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.3105.1.S1_at1/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04350OsAffx.30816.1.S1_s_at11/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.1.S1_at10/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.2.S1_at4/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350Os.53709.1.S1_at1/1112+1841433..1842707Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31574.1.S1_at--1033--4313Chr12:1822175..1822199 (25 bp)
CCATGGCCATCAAGAGGCATCTGAT
NONE
OsAffx.31574.1.S1_at--582--1711NONE
ACCACATGGCTCAAGGCGCTTATAT
NONE
OsAffx.31574.1.S1_at--177--5492Chr12:1821836..1821860 (25 bp)
GAACATTGATGTGGCTGTCCGGCAA
LOC_Os12g04300
OsAffx.31574.1.S1_at--534--852Chr12:1821804..1821828 (25 bp)
ATGGCATCTCGCATTTCGGGCCGTT
LOC_Os12g04300
OsAffx.31574.1.S1_at--786--3572Chr12:1821793..1821817 (25 bp)
CATTTCGGGCCGTTTTGGGAGCACG
LOC_Os12g04300
OsAffx.31574.1.S1_at--848--4752Chr12:1821697..1821721 (25 bp)
GCTGACACGCTTGGCCTATTGAGAC
LOC_Os12g04300
OsAffx.31574.1.S1_at--306--4452Chr12:1821684..1821708 (25 bp)
GCCTATTGAGACGTTTGGCCGAGTT
LOC_Os12g04300
OsAffx.31574.1.S1_at--297--1812Chr12:1821651..1821675 (25 bp)
ACCCGTTCACGGTTGAGGAGCAAGA
LOC_Os12g04300
OsAffx.31574.1.S1_at--709--2332Chr12:1821532..1821556 (25 bp)
AAAGACGTACCGAACAACATATTCT
LOC_Os12g04300
OsAffx.31574.1.S1_at--848--8012Chr12:1821483..1821507 (25 bp)
GGAGGAACTATCTGACACCGGAGAT
LOC_Os12g04300
OsAffx.31574.1.S1_at--837--10251Chr12:1821424..1821448 (25 bp)
TTTGAAGGAACTGGCTTGTTGTTTC
LOC_Os12g04300
Target Sequence 
CCATGGCCATCAAGAGGCATCTGATGGCGCGCACCACGGACGTCTTCATCGCCACCTTCCCCAAGTCCGGCACCACATGG
CTCAAGGCGCTTATATTCNTNTCATGGAACATTGATGTGGCTGTCCGGCAATTCTGCNATGGCATCTCGCATTTCGGGCC
GTTTTGGGAGCACGTCCTCGGCTACTGGCGGTGGCACGTCGAGANGCCAAGCCAGGTGTTCTTCTTGACCTACGAGGAGC
TTGCNGCTGACACGCTTGGCCTATTGAGACGTTTGGCCGAGTTNGTTGGGCACCCGTTCACGGTTGAGGAGCAAGAGGCT
GGAGTGGATAGGAAGATTGTGGAGATNTGTGCCATGGAGAGCTNGTCGAGGTTAGANGTGAATCTGTCGGGGNCANCTGA
CTTTATCGAGAAAGACGTACCGAACAACATATTCTTCCGGNGTGGAGTAGTCGGAGATTGGAGGAACTATCTGACACCGG
AGATGGCAATGAAAATTGATGAGATCATCGAGATCAAGTTTGAAGGAACTGGCTTGTTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis