Browse Element(s) Details


Os.26409.2.S1_s_at

Description gb:AK058901.1
DB_XREF= gi:32968919
TID=Os.26409.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26409 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for chilling-inducible protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A08, full insert sequence.
FL= gb:AK058901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0452011/11TAP42-like family protein, expressed
LOC_Os12g0429011/11TAP42-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04490Os.26862.3.S1_a_at11/1111+1878361..1880910saccharopine dehydrogenase family protein, expressed
LOC_Os11g04500Os.5332.1.S1_at9/1111+1882964..1886469Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os11g04510OsAffx.19484.1.S1_at11/1111+1890538..1891459hypothetical protein
LOC_Os11g04520Os.26409.3.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.1.S1_a_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.2.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04530OsAffx.31574.2.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.31574.1.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.19485.1.S1_at1/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04540OsAffx.19485.1.S1_s_at11/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.19485.1.S1_at10/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.3105.1.S1_at1/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04550OsAffx.30816.1.S1_s_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04550OsAffx.30816.2.S1_at11/1111+1919916..1920932Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0008601molecular_functionprotein phosphatase type 2A regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26409.2.S1_s_at--748--10032Chr12:1819410..1819434 (25 bp)
TAGAGCAAGTGTTTCACAAGCACAT
LOC_Os12g04290
Os.26409.2.S1_s_at--32--5192Chr12:1819414..1819438 (25 bp)
GCAAGTGTTTCACAAGCACATGAGC
LOC_Os12g04290
Os.26409.2.S1_s_at--261--1472Chr12:1819507..1819531 (25 bp)
AGAATGGCAGCACAAGTTTTTCAGC
LOC_Os12g04290
Os.26409.2.S1_s_at--427--5052Chr12:1819513..1819537 (25 bp)
GCAGCACAAGTTTTTCAGCCAAGTT
LOC_Os12g04290
Os.26409.2.S1_s_at--347--1012Chr12:1820252..1820276 (25 bp)
AGGTTGCCAACGATGAGCATAGAAG
LOC_Os12g04290
Os.26409.2.S1_s_at--434--8932Chr12:1820428..1820452 (25 bp)
TGACTGGAAGGACGATAACCCTCGT
LOC_Os12g04290
Os.26409.2.S1_s_at--32--5292Chr12:1820434..1820458 (25 bp)
GAAGGACGATAACCCTCGTGGTGCA
LOC_Os12g04290
Os.26409.2.S1_s_at--980--9792Chr12:1820443..1820467 (25 bp)
TAACCCTCGTGGTGCAGGCAACAAG
LOC_Os12g04290
Os.26409.2.S1_s_at--704--932Chr12:1820458..1820482 (25 bp)
AGGCAACAAGAAGCTCACTCCCTGT
LOC_Os12g04290
Os.26409.2.S1_s_at--794--2212Chr12:1820463..1820487 (25 bp)
ACAAGAAGCTCACTCCCTGTGGCTA
LOC_Os12g04290
Os.26409.2.S1_s_at--637--632Chr12:1820494..1820518 (25 bp)
ATGCTATGGCAATTCTATTGAACTT
LOC_Os12g04290
Target Sequence 
TAGAGCAAGTGTTTCACAAGCACATGAGCACAAACACCAGCCGCTGATATTTGGCCCTGCAAGTCTTGTTGGTGGAGGAC
TAACCAGTGAAAGAGAGAGAATGGCAGCACAAGTTTTTCAGCCAAGTTATAGGTTGCCAACGATGAGCATAGAAGAAGCT
GACTGGAAGGACGATAACCCTCGTGGTGCAGGCAACAAGAAGCTCACTCCCTGTGGCTAAATTATATGCTATGGCAATTC
TATTGAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26409.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis