Browse Element(s) Details


OsAffx.30816.2.S1_at

Description tigr:9639.m00367
TID=OsAffx.30816.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0455011/11Sulfotransferase domain containing protein
LOC_Os12g043504/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04520Os.26409.3.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.1.S1_a_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.2.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04530OsAffx.31574.2.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.31574.1.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.19485.1.S1_at1/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04540OsAffx.19485.1.S1_s_at11/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.19485.1.S1_at10/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.3105.1.S1_at1/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04550OsAffx.30816.1.S1_s_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04550OsAffx.30816.2.S1_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04560Os.11301.1.S1_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04560Os.11301.1.S1_x_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04570OsAffx.31575.1.S1_x_at11/1111+1932987..1937558GRAS family transcription factor containing protein, expressed
LOC_Os11g04580OsAffx.24964.1.S1_s_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.1.S1_x_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_s_at7/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_x_at3/1111+1939369..1940190hypothetical protein
LOC_Os11g04590OsAffx.19487.1.S1_x_at11/1111+1941620..1943002GRAS family transcription factor containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30816.2.S1_at--313--9471Chr11:1920458..1920482 (25 bp)
TCTGTTGCTGACTCCAGCTGCAAGG
LOC_Os11g04550
OsAffx.30816.2.S1_at--641--591Chr11:1920423..1920447 (25 bp)
ATGCCGGGATCCCAAGGACTGCTTC
LOC_Os11g04550
OsAffx.30816.2.S1_at--87--10552Chr12:1841804..1841828 (25 bp)
TTCATCTCGCTCTGGCATTTCTTGA
LOC_Os12g04350
OsAffx.30816.2.S1_at--262--472Chr12:1841801..1841825 (25 bp)
ATCTCGCTCTGGCATTTCTTGAACA
LOC_Os12g04350
OsAffx.30816.2.S1_at--389--4132Chr12:1841797..1841821 (25 bp)
CGCTCTGGCATTTCTTGAACAGGTT
LOC_Os12g04350
OsAffx.30816.2.S1_at--954--9572Chr12:1841785..1841809 (25 bp)
TCTTGAACAGGTTCAGGCCGTGGGA
LOC_Os12g04350
OsAffx.30816.2.S1_at--510--1531Chr11:1920157..1920181 (25 bp)
AGCAGGAGATCGAAGTGGACAGAAA
LOC_Os11g04550
OsAffx.30816.2.S1_at--41--5671Chr11:1920068..1920092 (25 bp)
GACATGGTCGATAAAACCTATGCGA
LOC_Os11g04550
OsAffx.30816.2.S1_at--172--7811Chr11:1920063..1920087 (25 bp)
GGTCGATAAAACCTATGCGAACAAC
LOC_Os11g04550
OsAffx.30816.2.S1_at--951--3071Chr11:1920002..1920026 (25 bp)
AATCACCTGACACCGGAAATGGCGC
LOC_Os11g04550
OsAffx.30816.2.S1_at--181--1771Chr11:1919998..1920022 (25 bp)
ACCTGACACCGGAAATGGCGCGGAG
LOC_Os11g04550
Target Sequence 
TCTGTTGCTGACTCCAGCTGCAAGGTGGTGTATCTATGCCGGGATCCCAAGGACTGCTTCATCTCGCTCTGGCATTTCTT
GAACAGGTTCAGGCCGTGGGACATCAACGAGGCACACCGAAACTTCTGCGATGGTGTCTCACTGTTTGGCCCGTACTGGG
AGCATGTCCTCGGCTATTGGAGGTGGCACGTCAAGAGACCAAGCCAGGTACTCTTCTTGACCTATGAGGAGCTCACTACC
GATACACTCGGCCAACTGAGACGCCTAGCCGAGTTCGTCGGACGCCCGTTCATGGTGAAGGAGCAGGAGATCGAAGTGGA
CAGAAAGATCGTGGAGGCCTGCGCCATGGAGAGCTTGTCGAGGTTGGAAGTGAACCAGTCGGGGACAACTGACATGGTCG
ATAAAACCTATGCGAACAACATATTCTTCCGGCGTGGCGTGGTTGGTGATTGGAGGAATCACCTGACACCGGAAATGGCG
CGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30816.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis