Browse Element(s) Details


OsAffx.19487.1.S1_x_at

Description tigr:9640.m00353
TID=OsAffx.19487.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAS family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0438011/11GRAS family transcription factor containing protein
LOC_Os11g0459011/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04330OsAffx.7481.1.S1_at11/1112+1833700..1834413hypothetical protein
LOC_Os12g04340OsAffx.19485.2.S1_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.19485.1.S1_s_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.3105.1.S1_at1/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04350OsAffx.30816.1.S1_s_at11/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.1.S1_at10/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.2.S1_at4/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350Os.53709.1.S1_at1/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04360Os.11301.1.S1_x_at10/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04360Os.11301.1.S1_at9/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04370OsAffx.31575.1.S1_x_at11/1112+1852598..1857136GRAS family transcription factor containing protein
LOC_Os12g04380OsAffx.19487.1.S1_x_at11/1112+1858794..1860188GRAS family transcription factor containing protein
LOC_Os12g04390OsAffx.31576.1.S1_at11/1112+1863322..1864544hypothetical protein
LOC_Os12g04400NANA12+1866002..1866811hypothetical protein
LOC_Os12g04410Os.49532.1.S1_s_at4/1112+1868475..1871099ankyrin repeat family protein, putative, expressed
LOC_Os12g04424Os.5263.2.S1_x_at11/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_x_at6/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_at5/1112+1881576..1887256Strictosidine synthase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19487.1.S1_x_at--254--1532Chr12:1859272..1859296 (25 bp)
AGCAGGACGCGGACCACAACGGCGT
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--61--2212Chr12:1859257..1859281 (25 bp)
ACAACGGCGTCTCCTTCCGGAAGCG
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--1063--1932Chr12:1859254..1859278 (25 bp)
ACGGCGTCTCCTTCCGGAAGCGCTT
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--753--9492Chr12:1859248..1859272 (25 bp)
TCTCCTTCCGGAAGCGCTTCTGCGA
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--376--10672Chr12:1859243..1859267 (25 bp)
TTCCGGAAGCGCTTCTGCGAGGCGC
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--795--6412Chr12:1859094..1859118 (25 bp)
GATCAAGGGCGTCCTACTCCGGGAT
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--779--1852Chr12:1858960..1858984 (25 bp)
ACGACATGGTGAGGCGATGCGGATT
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--1029--592Chr12:1858944..1858968 (25 bp)
ATGCGGATTGAGACGCTGCGAGAAC
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--469--892Chr12:1858880..1858904 (25 bp)
AGGCCTCTCTACTCGATCTCGGCAT
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--391--9512Chr12:1858875..1858899 (25 bp)
TCTCTACTCGATCTCGGCATGGCGG
LOC_Os12g04380
OsAffx.19487.1.S1_x_at--350--3772Chr12:1858874..1858898 (25 bp)
CTCTACTCGATCTCGGCATGGCGGC
LOC_Os12g04380
Target Sequence 
AGCAGGACGCGGACCACAACGGCGTCTCCTTCCGGAAGCGCTTCTGCGAGGCGCTCCACCACTACGCCGCCGTGTTCGAC
AGCCTCGACGNNNCCGCGGCCGCCACCACCTCGGCGGCGTCGCNCCTGTGGTCNCCCGACGANCGCGCGCAGGTGGAGCG
CGTCGTGGTGGGCGAGGAGATCAAGGGCGTCCTACTCCGGGATGGCGCGCACCGGCGGGANNGGCACGACCGGCTGCGGC
ANTGGGCNGCGCGCATGGAGATGGCCGGGTTCACCGGCGTGCCGCTCAGCTACGCCGCCATCANGAAGGGGAACGACATG
GTGAGGCGATGCGGATTGAGACGCTGCGAGAACANGGAATGCGGCGGCTGCCTCCTNCTGTGCTGGAGCTCNAGGCCTCT
CTACTCGATCTCGGCATGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19487.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis