Browse Element(s) Details


OsAffx.15881.1.S1_at

Description tigr:9634.m04026
TID=OsAffx.15881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4175011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41720OsAffx.15880.1.S1_s_at11/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.15880.1.S1_at7/116+25006642..25007270hypothetical protein
LOC_Os06g41720OsAffx.31575.1.S1_x_at1/116+25006642..25007270hypothetical protein
LOC_Os06g41730Os.12814.2.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_x_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41740NANA6+25019460..25020425transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g41750OsAffx.15881.1.S1_at11/116+25024005..25033554TPR Domain containing protein, expressed
LOC_Os06g41760NANA6+25037385..25038575hypothetical protein
LOC_Os06g41770Os.10686.1.S1_at9/116+25040775..25043104bZIP transcription factor family protein, expressed
LOC_Os06g41780Os.47903.1.A1_at11/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41780OsAffx.11966.1.S1_x_at1/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41790Os.7462.1.S1_at11/116+25053772..25057838RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005680cellular_componentanaphase-promoting complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15881.1.S1_at--1064--4671Chr06:25025178..25025321 (25 bp)
GCGGTCACGAGTATTCTGCATTGGA
LOC_Os06g41750
OsAffx.15881.1.S1_at--1067--10171Chr06:25025138..25025162 (25 bp)
TATAAAACTATACCGCTCTGCACTT
LOC_Os06g41750
OsAffx.15881.1.S1_at--1092--6111Chr06:25025073..25025097 (25 bp)
GAGTGGTGTACCTTCGCCAGGAAAA
LOC_Os06g41750
OsAffx.15881.1.S1_at--145--351Chr06:25025008..25025032 (25 bp)
ATAAATCCTTGCTCTTCTGTTCTTA
LOC_Os06g41750
OsAffx.15881.1.S1_at--866--3871Chr06:25024992..25025016 (25 bp)
CTGTTCTTATGTGCTATCTTGGGAT
LOC_Os06g41750
OsAffx.15881.1.S1_at--1057--10831Chr06:25024974..25024998 (25 bp)
TTGGGATGGCCTTGCATGCTTTAAA
LOC_Os06g41750
OsAffx.15881.1.S1_at--221--3031Chr06:25024542..25024566 (25 bp)
AATCCACTCCCCAAGTATCAAAAGG
LOC_Os06g41750
OsAffx.15881.1.S1_at--874--8291Chr06:25024519..25024543 (25 bp)
GGCTTTAATCCTTCTAGGCCTACAA
LOC_Os06g41750
OsAffx.15881.1.S1_at--815--2251Chr06:25024494..25024518 (25 bp)
AAATACCCTGATGCTCTGGATGAGT
LOC_Os06g41750
OsAffx.15881.1.S1_at--438--10231Chr06:25024368..25024392 (25 bp)
TTTGGCATTGCCCTGGATTTGAAAC
LOC_Os06g41750
OsAffx.15881.1.S1_at--804--4271Chr06:25024341..25024365 (25 bp)
CCTGCTGCTGACGTTGCTATAATCA
LOC_Os06g41750
Target Sequence 
GCGGTCACGAGTATTCTGCATTGGAGGATTATGAGAACAGTATAAAACTATACCGCTCTGCACTTCAGGTAGATGAAAGA
CACTACAATGCCTGGTATGGCCTTGGAGTGGTGTACCTTCGCCAGGAAAAGTTTGAGTTTGCTGAGCATCATTTCAGAAG
GGCATTCCAGATAAATCCTTGCTCTTCTGTTCTTATGTGCTATCTTGGGATGGCCTTGCATGCTTTAAAGAGGAATGAGG
AAGCCTTGGAAATGATGGAGAACGCTATATTTGCTGATAAGAAGAATCCACTCCCCAAGTATCAAAAGGCTTTAATCCTT
CTAGGCCTACAAAAATACCCTGATGCTCTGGATGAGTTGGAACGGCTAAAGGAAATTGCACCTCATGAAAGTAGTATGTA
TGCACTGATGGGAAAGATTTACAAGCAACTTAACATTCTTGACAAGGCTGTATTTTGCTTTGGCATTGCCCTGGATTTGA
AACCTCCTGCTGCTGACGTTGCTATAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis