Browse Element(s) Details


Os.7462.1.S1_at

Description gb:AK065654.1
DB_XREF= gi:32975672
TID=Os.7462.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035J16, full insert sequence.
FL= gb:AK065654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4179011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41750OsAffx.15881.1.S1_at11/116+25024005..25033554TPR Domain containing protein, expressed
LOC_Os06g41760NANA6+25037385..25038575hypothetical protein
LOC_Os06g41770Os.10686.1.S1_at9/116+25040775..25043104bZIP transcription factor family protein, expressed
LOC_Os06g41780Os.47903.1.A1_at11/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41780OsAffx.11966.1.S1_x_at1/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41790Os.7462.1.S1_at11/116+25053772..25057838RNA recognition motif family protein, expressed
LOC_Os06g41800Os.55092.1.S1_at11/116+25065393..25070031Dihydroflavonol-4-reductase, putative, expressed
LOC_Os06g41810Os.15971.1.S1_at11/116+25072609..25075490NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41820OsAffx.28052.1.S1_at11/116+25079896..25080933Strictosidine synthase family protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7462.1.S1_at--509--8272Chr11:16554178..16554288 (24 bp)
GGCATGCTTCTTTTCTTGCAAACTG
NONE
Os.7462.1.S1_at--645--6711Chr06:25054273..25054297 (25 bp)
GTTCTCCTTATCCATGGTTACCTGA
LOC_Os06g41790
Os.7462.1.S1_at--13--5291Chr06:25054234..25054258 (25 bp)
GAATGTCAAGCTGCTCCGTTGGAAG
LOC_Os06g41790
Os.7462.1.S1_at--637--4911Chr06:25054169..25054193 (25 bp)
GCTTCTGTCAAGTGTCTGTGCATTC
LOC_Os06g41790
Os.7462.1.S1_at--314--3151Chr06:25054128..25054152 (25 bp)
AATTCTGATAGCTGGTGGCCTGTAC
LOC_Os06g41790
Os.7462.1.S1_at--1120--5891Chr06:25054023..25054047 (25 bp)
GAGCTAGTCAATTCTTTCAAACGTT
LOC_Os06g41790
Os.7462.1.S1_at--978--2571Chr06:25054004..25054028 (25 bp)
AACGTTGCTGATGCGTCTGGTTACA
LOC_Os06g41790
Os.7462.1.S1_at--524--10831Chr06:25053978..25054002 (25 bp)
TTGTGTATAGCCCAATTCTCTCATC
LOC_Os06g41790
Os.7462.1.S1_at--928--10571Chr06:25053946..25053970 (25 bp)
TTCTCGTCATCTCCAATGCATGTGA
LOC_Os06g41790
Os.7462.1.S1_at--404--4011Chr06:25053883..25053907 (25 bp)
CGTCCTCGGCTGGTTGTGTAAATTA
LOC_Os06g41790
Os.7462.1.S1_at--1136--2251Chr06:25053780..25053804 (25 bp)
AAATAATCAACTGCTCCTACCTGTT
LOC_Os06g41790
Target Sequence 
GGCATGCTTCTTTTCTTGCAAACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAA
ATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCACTCTTGCGCTGCTTCTGTCAA
GTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAA
TGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTT
GCTGATGCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTG
TGTTGCATTATGTACAGCATTAGGGCGTTGGGTCGCGTCCTCGGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAA
CTGTTTATATCACTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCT
GTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis