Browse Element(s) Details


Os.55092.1.S1_at

Description gb:AK107469.1
DB_XREF= gi:32992678
TID=Os.55092.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B02, full insert sequence.
FL= gb:AK107469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4180011/11Dihydroflavonol-4-reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41770Os.10686.1.S1_at9/116+25040775..25043104bZIP transcription factor family protein, expressed
LOC_Os06g41780Os.47903.1.A1_at11/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41780OsAffx.11966.1.S1_x_at1/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41790Os.7462.1.S1_at11/116+25053772..25057838RNA recognition motif family protein, expressed
LOC_Os06g41800Os.55092.1.S1_at11/116+25065393..25070031Dihydroflavonol-4-reductase, putative, expressed
LOC_Os06g41810Os.15971.1.S1_at11/116+25072609..25075490NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41820OsAffx.28052.1.S1_at11/116+25079896..25080933Strictosidine synthase family protein
LOC_Os06g41830OsAffx.28052.1.S1_at11/116+25084540..25085529Strictosidine synthase family protein
LOC_Os06g41840Os.6207.1.S1_s_at11/116+25086047..25089148NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41850OsAffx.28052.1.S1_at11/116+25092245..25093297Strictosidine synthase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55092.1.S1_at--535--4111Chr06:25068609..25068633 (25 bp)
CGCACTCATCCTGACGTACGAAAAT
LOC_Os06g41800
Os.55092.1.S1_at--1160--8931Chr06:25068598..25068622 (25 bp)
TGACGTACGAAAATCCGGCGGCTTC
LOC_Os06g41800
Os.55092.1.S1_at--704--9031Chr06:25068560..25068584 (25 bp)
TGCAGCGCATACGACATCAAGGTGT
LOC_Os06g41800
Os.55092.1.S1_at--587--2971Chr06:25068531..25068555 (25 bp)
AATGGTTGACATCGTCAGGCGCTTC
LOC_Os06g41800
Os.55092.1.S1_at--840--10631Chr06:25068506..25068530 (25 bp)
TTCCCGGATATCAACTACCCAAAGT
LOC_Os06g41800
Os.55092.1.S1_at--428--5271Chr06:25065707..25065731 (25 bp)
GAATGCCTGAGGGATAGCGTTCAAT
LOC_Os06g41800
Os.55092.1.S1_at--212--1631Chr06:25065692..25065716 (25 bp)
AGCGTTCAATCCTACAAGGCTGCTG
LOC_Os06g41800
Os.55092.1.S1_at--34--9851Chr06:25065680..25065704 (25 bp)
TACAAGGCTGCTGGGATCCTGAAAT
LOC_Os06g41800
Os.55092.1.S1_at--1100--2971Chr06:25065526..25065550 (25 bp)
AATGTGTGTGCACTCTTTTCTTAGA
LOC_Os06g41800
Os.55092.1.S1_at--223--6111Chr06:25065431..25065455 (25 bp)
GAGTGAGAGTTTGGTTCCCTACCTC
LOC_Os06g41800
Os.55092.1.S1_at--951--6691Chr06:25065418..25065442 (25 bp)
GTTCCCTACCTCTTGGCAGTAATAA
LOC_Os06g41800
Target Sequence 
CGCACTCATCCTGACGTACGAAAATCCGGCGGCTTCCGGCCGCTACATCTGCAGCGCATACGACATCAAGGTGTCTGAAA
TGGTTGACATCGTCAGGCGCTTCTTCCCGGATATCAACTACCCAAAGTTTGTGGGAGGGGAGGATGAGAGGATTTTGAGC
TCCAAGAAGCTGCAGAAGCTGGGGTGGAAGTTCAGGACGGTGGAGGAATGCCTGAGGGATAGCGTTCAATCCTACAAGGC
TGCTGGGATCCTGAAATGAGCTAGATATTGGGATTTGAAAGAAAAATTTTAAACTAGCGTAGTGAATTGTTGAAGGTTGG
AATAATTTCATCTGTGTGCAATGCAATAAAACTTGTTAATTTACGAATTGCATCGGTAGGCAGTTAAATGTGTGTGCACT
CTTTTCTTAGAGGAAAGAAAAGGAGAGATTTTAAGACTGGAGAGTGCATTGTATGTTGATTGTGAAACCAGGTTGCCTGA
GGAGTGAGAGTTTGGTTCCCTACCTCTTGGCAGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis