Browse Element(s) Details


Os.6207.1.S1_s_at

Description gb:AK073641.1
DB_XREF= gi:32983664
TID=Os.6207.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full insert sequence.
FL= gb:AK073641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4184011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41800Os.55092.1.S1_at11/116+25065393..25070031Dihydroflavonol-4-reductase, putative, expressed
LOC_Os06g41810Os.15971.1.S1_at11/116+25072609..25075490NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41820OsAffx.28052.1.S1_at11/116+25079896..25080933Strictosidine synthase family protein
LOC_Os06g41830OsAffx.28052.1.S1_at11/116+25084540..25085529Strictosidine synthase family protein
LOC_Os06g41840Os.6207.1.S1_s_at11/116+25086047..25089148NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41850OsAffx.28052.1.S1_at11/116+25092245..25093297Strictosidine synthase family protein
LOC_Os06g41860NANA6+25097380..25098156hypothetical protein
LOC_Os06g41870NANA6+25107487..25107870hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6207.1.S1_s_at--355--7031Chr06:25087125..25087149 (25 bp)
GTACAGTCATACTTGGATGTCTGAA
LOC_Os06g41840
Os.6207.1.S1_s_at--897--331Chr06:25086654..25086678 (25 bp)
ATACATCTGCAGTTCACACGCAAGA
LOC_Os06g41840
Os.6207.1.S1_s_at--523--5311Chr06:25086631..25086655 (25 bp)
GAAGGATGCCTCATATCATTGACTT
LOC_Os06g41840
Os.6207.1.S1_s_at--652--9811Chr06:25086604..25086628 (25 bp)
TAAAGAGCTGGTATCCCGGTTACAA
LOC_Os06g41840
Os.6207.1.S1_s_at--275--4631Chr06:25086383..25086407 (25 bp)
GCGATGAGCCGCAATTCAACTCGGG
LOC_Os06g41840
Os.6207.1.S1_s_at--361--5951Chr06:25086266..25086290 (25 bp)
GAGCAAATGGTGTCCTGTGTATATA
LOC_Os06g41840
Os.6207.1.S1_s_at--1029--3311Chr06:25086216..25086240 (25 bp)
CACATTGATCGGGTTCTAGGCTTAG
LOC_Os06g41840
Os.6207.1.S1_s_at--378--6851Chr06:25086168..25086192 (25 bp)
GTTTGTTTTGATCGACCTTAATTGG
LOC_Os06g41840
Os.6207.1.S1_s_at--270--5831Chr06:25086155..25086179 (25 bp)
GACCTTAATTGGATCTGGCCTCTTT
LOC_Os06g41840
Os.6207.1.S1_s_at--665--8451Chr06:25086140..25086164 (25 bp)
TGGCCTCTTTGGCAACATCTGTATG
LOC_Os06g41840
Os.6207.1.S1_s_at--145--6531Chr06:25086056..25086080 (25 bp)
GATTTGCGCTGAGAATTATGCCATT
LOC_Os06g41840
Target Sequence 
GTACAGTCATACTTGGATGTCTGAAAGGTGATTGTGAGGTAAAAATCAAACTGAGGAACTTTGTGGATGTCAGGGATGTT
GCCNGATGCTCTTCTTTTACTGTATGAAACCCCAGGGGTCTCCGGACGATACATCTGCAGTTCACACGCAAGAAGGATGC
CTCATATCATTGACTTACTAAAGAGCTGGTATCCCGGTTACAAATTTGCCGACAAGTTTGTGGAAGTGAGCGATGAGCCG
CAATTCAACTCGGGGAAGCTAGAGAAGCTAGGATGGAAAATCAAGCCATTTGAGGAAACACTCAGGGACAGTGTTGAATC
TTATAGAGCTGCAGGTGTCCTGGATTGAGCAAATGGTGTCCTGTGTATATACCAANCACAATTGAAGGAATTACCAACAC
ATTGATCGGGTTCTAGGCTTAGTTTAATAGATCTACTACATAGGTGTTTGTTTTGATCGACCTTAATTGGATCTGGCCTC
TTTGGCAACATCTGTATGNAAGAGCTGCCTATTTGGCAGCAGCTGGGAGTAGAAGATAAAATTATCTTTTGGTGATGGAT
TTGCGCTGAGAATTATGCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6207.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis