Browse Element(s) Details


OsAffx.28042.1.S1_at

Description tigr:9634.m03997
TID=OsAffx.28042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4150011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41460Os.10827.1.S1_x_at11/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460Os.46055.2.S1_x_at6/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.1.S1_s_at11/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.7.S1_s_at11/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.2.S1_x_at5/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.5.S1_x_at2/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41480Os.52222.1.S1_at11/116+24865900..24870160NB-ARC domain containing protein, expressed
LOC_Os06g41490OsAffx.5077.1.S1_at10/116+24872664..24874065hypothetical protein
LOC_Os06g41490OsAffx.8169.1.S1_at2/116+24872664..24874065hypothetical protein
LOC_Os06g41500OsAffx.28042.1.S1_at11/116+24876427..24878413D-mannose binding lectin family protein
LOC_Os06g41510OsAffx.28042.2.S1_at11/116+24887619..24890114D-mannose binding lectin family protein
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein
LOC_Os06g41530NANA6+24899901..24900272hypothetical protein
LOC_Os06g41540Os.57179.1.S1_at11/116+24901269..24902792hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28042.1.S1_at--342--5551Chr06:24877077..24877101 (25 bp)
GAAACGTTATGACGAAAGCGCTGAT
LOC_Os06g41500
OsAffx.28042.1.S1_at--274--2811Chr06:24877051..24877075 (25 bp)
AAGGTCCGGACGAGCAGCCCTCGGA
LOC_Os06g41500
OsAffx.28042.1.S1_at--776--3191Chr06:24876866..24876890 (25 bp)
CAATGGGTTCCAAAGGTCGCTGGGA
LOC_Os06g41500
OsAffx.28042.1.S1_at--465--8271Chr06:24876813..24876837 (25 bp)
GGCATGGCCAAGTCACTGCAACCAC
LOC_Os06g41500
OsAffx.28042.1.S1_at--892--2831Chr06:24876804..24876828 (25 bp)
AAGTCACTGCAACCACCTGACATCG
LOC_Os06g41500
OsAffx.28042.1.S1_at--374--7591Chr06:24876740..24876764 (25 bp)
GGGAATTCCTGAACGAGGTGCAGTC
LOC_Os06g41500
OsAffx.28042.1.S1_at--512--1731Chr06:24876698..24876722 (25 bp)
ACCGGAACCTAGTCCGCATGGTTGG
LOC_Os06g41500
OsAffx.28042.1.S1_at--226--10071Chr06:24876689..24876713 (25 bp)
TAGTCCGCATGGTTGGATACTGCAA
LOC_Os06g41500
OsAffx.28042.1.S1_at--888--571Chr06:24876630..24876654 (25 bp)
ATGCCGGGTGGTTCCCTCCGAAGCA
LOC_Os06g41500
OsAffx.28042.1.S1_at--119--4071Chr06:24876565..24876589 (25 bp)
CGAGGCCGCACTTGGCATTGCCAAG
LOC_Os06g41500
OsAffx.28042.1.S1_at--116--1851Chr06:24876524..24876548 (25 bp)
ACGAAGGGTGCACCTCTCCTATCAT
LOC_Os06g41500
Target Sequence 
GAAACGTTATGACGAAAGCGCTGATCAAGGTCCGGACGAGCAGCCCTCGGAGAAGAGCGCCGCCGCTGCCGAGCTCCACC
GAGCCACCAATGGGTTCCAAAGGTCGCTGGGAAGGGGGAGGCTTCGGCGAGGTCTACCATGGCATGGCCAAGTCACTGCA
ACCACCTGACATCGCGGTGAAGAAGCTCATCACCTCCAACGAGTACAGCGAGAGGGAATTCCTGAACGAGGTGCAGTCCA
TCGGGCGGATCCACCACCGGAACCTAGTCCGCATGGTTGGATACTGCAAGGAGCGGGAGCAGCGGATGCTGGTATTCGAG
TTCATGCCGGGTGGTTCCCTCCGAAGCATCCTCTTCCAGACTCCACGTCCACCATGGAGCTGGCGCACCGAGGCCGCACT
TGGCATTGCCAAGGGGATTGAGTACCTGCACGAAGGGTGCACCTCTCCTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis