Browse Element(s) Details


OsAffx.31015.1.S1_at

Description tigr:9639.m01589
TID=OsAffx.31015.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1733011/11NB-ARC domain containing protein
LOC_Os11g171104/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17300Os.52732.1.S1_x_at11/1111+9612797..9617365transposon protein, putative, unclassified, expressed
LOC_Os11g17310Os.46012.2.S1_x_at7/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.46012.3.S1_x_at6/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.27088.1.A1_x_at5/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.54691.1.S1_x_at1/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17320OsAffx.18895.1.S1_at10/1111+9636728..9638137hypothetical protein
LOC_Os11g17330OsAffx.31015.1.S1_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17330OsAffx.31015.2.S1_s_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17340NANA11+9650873..9651283hypothetical protein
LOC_Os11g17350NANA11+9652410..9653420expressed protein
LOC_Os11g17360OsAffx.7131.1.S1_at10/1111+9654069..9655199hypothetical protein
LOC_Os11g17370OsAffx.22848.4.S1_x_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.4.S1_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.3.S1_x_at1/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17380OsAffx.7132.1.S1_at11/1111+9666331..9673120Protein kinase domain containing protein
LOC_Os11g17380OsAffx.8160.1.S1_x_at1/1111+9666331..9673120Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31015.1.S1_at--997--9912Chr11:9644788..9644812 (25 bp)
TACTGTTTCCCCATAATTCCAGAGT
LOC_Os11g17330
OsAffx.31015.1.S1_at--123--6232Chr11:9644814..9644838 (25 bp)
GATGGCCACGCTTTTTAACGTCGCA
LOC_Os11g17330
OsAffx.31015.1.S1_at--262--9812Chr11:9644829..9644853 (25 bp)
TAACGTCGCATTCCTGGACATCAAT
LOC_Os11g17330
OsAffx.31015.1.S1_at--780--1152Chr11:9644952..9644976 (25 bp)
AGTCTTCGGCAGCAATGGGTTCCAA
LOC_Os11g17330
OsAffx.31015.1.S1_at--403--1191Chr11:9645062..9645086 (25 bp)
AGTTTCGGTTCAACGTGTGGGCACG
LOC_Os11g17330
OsAffx.31015.1.S1_at--1149--7471Chr11:9645078..9645102 (25 bp)
GTGGGCACGAACACTAGGATCTCTA
LOC_Os11g17330
OsAffx.31015.1.S1_at--147--7971Chr11:9645094..9645118 (25 bp)
GGATCTCTAGACAGCAACTTCTATG
LOC_Os11g17330
OsAffx.31015.1.S1_at--1022--8991Chr11:9645117..9645141 (25 bp)
TGAAGGCCTCCAGAACATGGCTTGC
LOC_Os11g17330
OsAffx.31015.1.S1_at--805--3492Chr11:9645132..9645156 (25 bp)
CATGGCTTGCCTCAAGAATCTTGTC
LOC_Os11g17330
OsAffx.31015.1.S1_at--249--7911Chr11:9645207..9645231 (25 bp)
GGTTGCTGCGAAGAATGCCATTGCA
LOC_Os11g17330
OsAffx.31015.1.S1_at--219--3812Chr11:9645241..9645265 (25 bp)
CTCCCCGATCATCTCAATGTTCAAA
LOC_Os11g17330
Target Sequence 
TACTGTTTCCCCATAATTCCAGAGTGGATGGCCACGCTTTTTAACGTCGCATTCCTGGACATCAATGTTACTTCTGTGGG
GAAGGATGTTCTTCGGATCCTTGGGGACTTGCCTTCTCTCTTATCTCTTTCAATTACGACNAAAACAATTGTATCNGAAA
GGCTAGTCTTCGGCAGCAATGGGTTCCAATGTCNNAAAGAATTTNACTTCCATTCATGGCANGATGTCTTAGGTCCTTTA
TTGTTTGAGGTTGGGGCTATGCCAAAGCTCGAAAAGTTTCGGTTCAACGTGTGGGCACGAACACTAGGATCTCTAGACAG
CAACTTCTATGAAGGCCTCCAGAACATGGCTTGCCTCAAGAATCTTGTCATTGAGGTAGACTGTAGGGAGGCGAGGGCAG
AACAAGTGGAGGCTACAGAGGTTGCTGCGAAGAATGCCATTGCAAACAATCATCTCCCCGATCATCTCAATGTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis