Browse Element(s) Details


Os.52732.1.S1_x_at

Description gb:AK068971.1
DB_XREF= gi:32978995
TID=Os.52732.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001N11, full insert sequence.
FL= gb:AK068971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1730011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17260NANA11+9592328..9595261retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17270Os.2741.4.S1_x_at9/1111+9595472..9597021hypothetical protein
LOC_Os11g17280NANA11+9599140..9604429hypothetical protein
LOC_Os11g17290Os.27445.1.S1_at11/1111+9605155..9611657Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g17290Os.24671.1.A1_at2/1111+9605155..9611657Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g17300Os.52732.1.S1_x_at11/1111+9612797..9617365transposon protein, putative, unclassified, expressed
LOC_Os11g17310Os.46012.2.S1_x_at7/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.46012.3.S1_x_at6/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.27088.1.A1_x_at5/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.54691.1.S1_x_at1/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17320OsAffx.18895.1.S1_at10/1111+9636728..9638137hypothetical protein
LOC_Os11g17330OsAffx.31015.1.S1_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17330OsAffx.31015.2.S1_s_at11/1111+9641016..9645366NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52732.1.S1_x_at--694--6112Chr11:9613853..9613876 (24 bp)
GAGTGTGAGCCCGTGTTGAGCACAA
LOC_Os11g17300
Os.52732.1.S1_x_at--1159--10011Chr11:9613752..9613776 (25 bp)
TAGCACGGCGTTTCTTGTCAATGAG
LOC_Os11g17300
Os.52732.1.S1_x_at--1044--7071Chr11:9613736..9613760 (25 bp)
GTCAATGAGGTTTCCAACGCCATGG
LOC_Os11g17300
Os.52732.1.S1_x_at--450--7511Chr11:9613362..9613623 (25 bp)
GTGGATACACACAGTGTGAGCCCGT
LOC_Os11g17300
Os.52732.1.S1_x_at--1028--7372Chr11:9613849..9613873 (25 bp)
GTGAGCCCGTGTTGAGCACAAGATA
LOC_Os11g17300
Os.52732.1.S1_x_at--636--7572Chr11:9613789..9613813 (25 bp)
GGGCGGTCTTCACCTTATTCAAGGA
LOC_Os11g17300
Os.52732.1.S1_x_at--948--2472Chr11:9613764..9613788 (25 bp)
AACACTGTTCGATAGCACGGCGTTT
LOC_Os11g17300
Os.52732.1.S1_x_at--838--692Chr11:9613732..9613756 (25 bp)
ATGAGGTTTCCAACGCCATGGGAGC
LOC_Os11g17300
Os.52732.1.S1_x_at--1015--5852Chr11:9613711..9613735 (25 bp)
GAGCCTACGTGGTGACCCATGGTAA
LOC_Os11g17300
Os.52732.1.S1_x_at--1004--2472Chr11:9613660..9613684 (25 bp)
AACACGCTTTCCAAGTTACTGCTGA
LOC_Os11g17300
Os.52732.1.S1_x_at--449--6471Chr11:9612806..9613118 (25 bp)
GATACACACAGGTCTTTTCTGCCCA
LOC_Os11g17300
Target Sequence 
GAGTGTGAGCCCGTGTTGAGCACAAGATATGCGTTCGAGGAACAACTGAGCAAATTGTACACAAGGGCGGTCTTCACCTT
ATTCAAGGAAACACTGTTCGATAGCACGGCGTTTCTTGTCAATGAGGTTTCCAACGCCATGGGAGCCTACGTGGTGACCC
ATGGTAAGACAATTCGAAAGAACCCGTGGTCGCAACACGCTTTCCAAGTTACTGCTGATGTGGAGTCTGGGCTGTATGAA
TGCGAGTGCAAAACGTGGATACACACAGTGTGAGCCCGTGTTGAGCACAAGATATGCGTTCGAGGAACAACTGAGCAAAT
TGTACACAAGGGCGGTCTTCACCTTATTCAAGGAAACACTGTTCGATAGCACGGCGTTTCTTGTGAATGAGGTTTCCAAC
GCCATGGGAGCCTACGTGGTGACCCATGGTAAGACAATTCGAAAGAACCCGTGGTCGCAACACGCTTTCCAAGTTACTGC
TGATGTGGAGTCTGGGCTGTATGAATGCGAGTGCAAAACGTGGATACACACAGGTCTTTTCTGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52732.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis