Browse Element(s) Details


Os.27445.1.S1_at

Description gb:AK105058.1
DB_XREF= gi:32990267
TID=Os.27445.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E10, full insert sequence.
FL= gb:AK105058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1729011/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17230NANA11+9577017..9581073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17240Os.27691.1.S1_x_at1/1111+9581323..9582204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17250OsAffx.18894.1.S1_at11/1111+9586164..9587382hypothetical protein
LOC_Os11g17260NANA11+9592328..9595261retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17270Os.2741.4.S1_x_at9/1111+9595472..9597021hypothetical protein
LOC_Os11g17280NANA11+9599140..9604429hypothetical protein
LOC_Os11g17290Os.27445.1.S1_at11/1111+9605155..9611657Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g17290Os.24671.1.A1_at2/1111+9605155..9611657Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g17300Os.52732.1.S1_x_at11/1111+9612797..9617365transposon protein, putative, unclassified, expressed
LOC_Os11g17310Os.46012.2.S1_x_at7/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.46012.3.S1_x_at6/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.27088.1.A1_x_at5/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.54691.1.S1_x_at1/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27445.1.S1_at--540--2191Chr11:9610984..9611008 (25 bp)
ACAAATGATTGTGGCTTTTTAGCGA
LOC_Os11g17290
Os.27445.1.S1_at--773--3091Chr11:9611012..9611036 (25 bp)
AATACATTCAGTTCTGGGATGGCAA
LOC_Os11g17290
Os.27445.1.S1_at--197--5531Chr11:9611049..9611177 (25 bp)
GAAAGTTTGCCCTAAGGATGGAACA
LOC_Os11g17290
Os.27445.1.S1_at--133--2251Chr11:9611178..9611202 (25 bp)
AAATATCGTGCGGAGGTCCTCTATT
LOC_Os11g17290
Os.27445.1.S1_at--416--1031Chr11:9611191..9611215 (25 bp)
AGGTCCTCTATTACATACTCTTCCA
LOC_Os11g17290
Os.27445.1.S1_at--407--1951Chr11:9611219..9611243 (25 bp)
ACTGAACGAGGCGAAGCTCCCTGCG
LOC_Os11g17290
Os.27445.1.S1_at--173--3811Chr11:9611235..9611259 (25 bp)
CTCCCTGCGGCTATTGAGCGATATA
LOC_Os11g17290
Os.27445.1.S1_at--799--6411Chr11:9611276..9611300 (25 bp)
GATCTCCAAGTAGTTCAGCTCTGTT
LOC_Os11g17290
Os.27445.1.S1_at--285--10052Chr11:9611406..9611430 (25 bp)
TAGGAACATTGCCACGTTTTTTAAG
LOC_Os11g17290
Os.27445.1.S1_at--611--7531Chr11:9611446..9611470 (25 bp)
GTGGCAGTAACGTACTTGGATGCTG
LOC_Os11g17290
Os.27445.1.S1_at--598--8171Chr11:9611514..9611538 (25 bp)
GGAACATTGCCACATTTTTGCAGTA
LOC_Os11g17290
Target Sequence 
ACAAATGATTGTGGCTTTTTAGCGATGAAATACATTCAGTTCTGGGATGGCAAAGTTTTTGTGAAGAAAGTTTGCCCTAA
GGATGGAACAAAATATCGTGCGGAGGTCCTCTATTACATACTCTTCCACCCACTGAACGAGGCGAAGCTCCCTGCGGCTA
TTGAGCGATATAGGCCTAAGATTAGGAAGATCTCCAAGTAGTTCAGCTCTGTTCTTTTTTCCAAGTTGTCTTTTGGAACT
TTGTACCTAAATGATTGCAGTAACATACTTAGATGCTGGTAGTAACATAATTAGTTGGTGGCAGTAACAGGAGACTGTTA
GGAACATTGCCACGTTTTTTAAGTAATGAAGGTGTACAGTGGCAGTAACGTACTTGGATGCTGGTAGTAAAAATACTTAG
TTGGTGGCAGTAACAGGAGACTGTTAGGAACATTGCCACATTTTTGCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis