Browse Element(s) Details


OsAffx.18894.1.S1_at

Description tigr:9639.m01581
TID=OsAffx.18894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1725011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17200OsAffx.19542.3.S1_x_at5/1111+9559676..9563584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17210NANA11+9569284..9571853hypothetical protein
LOC_Os11g17220NANA11+9575182..9575767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17230NANA11+9577017..9581073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17240Os.27691.1.S1_x_at1/1111+9581323..9582204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17250OsAffx.18894.1.S1_at11/1111+9586164..9587382hypothetical protein
LOC_Os11g17260NANA11+9592328..9595261retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17270Os.2741.4.S1_x_at9/1111+9595472..9597021hypothetical protein
LOC_Os11g17280NANA11+9599140..9604429hypothetical protein
LOC_Os11g17290Os.27445.1.S1_at11/1111+9605155..9611657Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g17290Os.24671.1.A1_at2/1111+9605155..9611657Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18894.1.S1_at--1110--2471Chr11:9587327..9587351 (25 bp)
AACCCGATGCAACCCAACTGGAAAG
LOC_Os11g17250
OsAffx.18894.1.S1_at--809--1011Chr11:9586373..9586396 (24 bp)
AGGTTCTCGAGATCATCTCCTGATT
LOC_Os11g17250
OsAffx.18894.1.S1_at--876--31Chr11:9586351..9586375 (25 bp)
ATTCCGTCCTTGGACCGATGGGTGA
LOC_Os11g17250
OsAffx.18894.1.S1_at--593--8351Chr11:9586329..9586353 (25 bp)
TGACCCGGACCCTACTGACCTTATT
LOC_Os11g17250
OsAffx.18894.1.S1_at--662--1971Chr11:9586316..9586340 (25 bp)
ACTGACCTTATTAACGCCGAGACGG
LOC_Os11g17250
OsAffx.18894.1.S1_at--63--2371Chr11:9586273..9586297 (25 bp)
AAACCAAGCCTGACCTAGCTCAATG
LOC_Os11g17250
OsAffx.18894.1.S1_at--914--1571Chr11:9586267..9586291 (25 bp)
AGCCTGACCTAGCTCAATGGAAGTT
LOC_Os11g17250
OsAffx.18894.1.S1_at--271--2971Chr11:9586252..9586276 (25 bp)
AATGGAAGTTGACCATCCACTTCTG
LOC_Os11g17250
OsAffx.18894.1.S1_at--1070--2051Chr11:9586234..9586258 (25 bp)
ACTTCTGGCCGTCCAAGCTTAAAGG
LOC_Os11g17250
OsAffx.18894.1.S1_at--814--8411Chr11:9586228..9586252 (25 bp)
GGCCGTCCAAGCTTAAAGGGTATAG
LOC_Os11g17250
OsAffx.18894.1.S1_at--502--411Chr11:9586203..9586227 (25 bp)
ATCATGGTACAAACGGCTGGCGGCC
LOC_Os11g17250
Target Sequence 
AACCCGATGCAACCCAACTGGAAAGGAAAAAACTCATCAAAACAATGAAAAGGTTCTCGAGATCATCTCCTGATTCCGTC
CTTGGACCGATGGGTGACCCGGACCCTACTGACCTTATTAACGCCGAGACGGAGAGGATCCCCTTCAAGCAAACCAAGCC
TGACCTAGCTCAATGGAAGTTGACCATCCACTTCTGGCCGTCCAAGCTTAAAGGGTATAGATCATGGTACAAACGGCTGG
CGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis