Browse Element(s) Details


OsAffx.18898.1.S1_at

Description tigr:9639.m01601
TID=OsAffx.18898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1745011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17400NANA11+9681935..9684305transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17410NANA11+9687193..9689026transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17420NANA11+9691098..9691628hypothetical protein
LOC_Os11g17430NANA11+9692055..9697114transposon protein, putative, unclassified
LOC_Os11g17440OsAffx.31018.4.S1_at10/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.3.S1_x_at7/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17440OsAffx.31018.2.S1_x_at1/1111+9697861..9705987enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g17450OsAffx.18898.1.S1_at11/1111+9707331..9707552hypothetical protein
LOC_Os11g17460NANA11+9711287..9712350retrotransposon protein, putative, unclassified
LOC_Os11g17469NANA11+9721297..9721616NA
LOC_Os11g17480OsAffx.18899.1.S1_at11/1111+9726250..9729878Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17490Os.53540.2.S1_at1/1111+9730897..9731630hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18898.1.S1_at--926--5071Chr11:9707498..9707522 (25 bp)
GCAGCCCGCGTCAAGAAGGCGCCGG
LOC_Os11g17450
OsAffx.18898.1.S1_at--829--5731Chr11:9707465..9707489 (25 bp)
GACTGGTTCCTCGACCTGTGTTTAT
LOC_Os11g17450
OsAffx.18898.1.S1_at--376--7891Chr11:9707461..9707485 (25 bp)
GGTTCCTCGACCTGTGTTTATGCTT
LOC_Os11g17450
OsAffx.18898.1.S1_at--297--10671Chr11:9707459..9707483 (25 bp)
TTCCTCGACCTGTGTTTATGCTTGC
LOC_Os11g17450
OsAffx.18898.1.S1_at--472--4291Chr11:9707457..9707481 (25 bp)
CCTCGACCTGTGTTTATGCTTGCGG
LOC_Os11g17450
OsAffx.18898.1.S1_at--705--9371Chr11:9707455..9707479 (25 bp)
TCGACCTGTGTTTATGCTTGCGGTG
LOC_Os11g17450
OsAffx.18898.1.S1_at--674--1771Chr11:9707452..9707476 (25 bp)
ACCTGTGTTTATGCTTGCGGTGGCA
LOC_Os11g17450
OsAffx.18898.1.S1_at--688--3891Chr11:9707420..9707444 (25 bp)
CTGTGGGAGGAGGTGCGGTGTATTC
LOC_Os11g17450
OsAffx.18898.1.S1_at--1120--9131Chr11:9707407..9707431 (25 bp)
TGCGGTGTATTCTGGGCAGCGGCGA
LOC_Os11g17450
OsAffx.18898.1.S1_at--1138--3911Chr11:9707388..9707412 (25 bp)
CGGCGAGGCTAGGTTCACGGAGGGA
LOC_Os11g17450
OsAffx.18898.1.S1_at--150--951Chr11:9707364..9707388 (25 bp)
AGGAAGGGATCAGTGCGATATGATA
LOC_Os11g17450
Target Sequence 
GCAGCCCGCGTCAAGAAGGCGCCGGGGCTCGTCGACTGGTTCCTCGACCTGTGTTTATGCTTGCGGTGGCAGCAGCAGCT
GTGGGAGGAGGTGCGGTGTATTCTGGGCAGCGGCGAGGCTAGGTTCACGGAGGGAGGAAGGGATCAGTGCGATATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis