Browse Element(s) Details


Os.18963.1.S1_a_at

Description gb:AK103296.1
DB_XREF= gi:32988505
TID=Os.18963.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.18963 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) mRNA for non-coding splice variant (rml1 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125B02, full insert sequence.
FL= gb:AK103296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4093011/11DNA binding protein GT-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40890OsAffx.29207.2.S1_at11/114+24053443..24053817hypothetical protein
LOC_Os04g40890OsAffx.29207.1.S1_x_at3/114+24053443..24053817hypothetical protein
LOC_Os04g40900Os.27605.1.S1_at5/114+24057495..24059304expressed protein
LOC_Os04g40910Os.22667.1.S1_at11/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910Os.52534.1.S1_x_at5/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910OsAffx.16986.1.S1_at4/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40960OsAffx.14225.1.S1_x_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40960OsAffx.14225.1.S1_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18963.1.S1_a_at--782--8531Chr04:24081543..24081567 (25 bp)
TGGAGCATACTCCTACCTTTTAATG
LOC_Os04g40930
Os.18963.1.S1_a_at--976--1471Chr04:24081581..24081605 (25 bp)
AGCAAATCATGGGTTCCTGGTTATT
LOC_Os04g40930
Os.18963.1.S1_a_at--693--2251Chr04:24081608..24081632 (25 bp)
AAATTTAGCTTTTGGCATCTTGACC
LOC_Os04g40930
Os.18963.1.S1_a_at--30--8291Chr04:24081621..24081645 (25 bp)
GGCATCTTGACCTAAGCTAATTTTA
LOC_Os04g40930
Os.18963.1.S1_a_at--855--1951Chr04:24081677..24081701 (25 bp)
ACTGGATATACATTGGTTACCCGAA
LOC_Os04g40930
Os.18963.1.S1_a_at--731--4811Chr04:24081753..24081777 (25 bp)
GCTCTCTGAAGATCCAAGGTGCTTT
LOC_Os04g40930
Os.18963.1.S1_a_at--373--711Chr04:24081804..24081828 (25 bp)
ATGAGGACCTGTTAGTTGCTGCCAA
LOC_Os04g40930
Os.18963.1.S1_a_at--473--7671Chr04:24081838..24081862 (25 bp)
GGGTTCCTCTGGTTTATATGTAAAT
LOC_Os04g40930
Os.18963.1.S1_a_at--200--6492Chr04:24081925..24081949 (25 bp)
GATACTGGGTTTTACATTTGTCACA
LOC_Os04g40930
Os.18963.1.S1_a_at--70--3371Chr04:24081984..24082008 (25 bp)
CAGAAGTGTAATTTGTCCGGACAAC
LOC_Os04g40930
Os.18963.1.S1_a_at--456--8951Chr04:24082049..24082073 (25 bp)
TGCAAACAGCCTTGGAAGTTCCGAA
LOC_Os04g40930
Target Sequence 
TGGAGCATACTCCTACCTTTTAATGCAATTTGAAGCCAAGCAAATCATGGGTTCCTGGTTATTGTAAATTTAGCTTTTGG
CATCTTGACCTAAGCTAATTTTAAATGTCCATGCAGCCGAAGGGGAAAAGTTATACTGGATATACATTGGTTACCCGAAG
TAAATAGCCTTGGAAGTTGGAACTTGAAAGTTGGAAATATGATCATTCAAGCTCTCTGAAGATCCAAGGTGCTTTGGCTG
AGTACAAAGATTACAGCCTAAATGAGGACCTGTTAGTTGCTGCCAACAGGTCCTGGGGTTCCTCTGGTTTATATGTAAAT
GTAAATGTAGCTCTGTAGCATCTTGGTGTTAGTTAGTTTCCAATGTGTTTGTTACCCATGCTGATACTGGGTTTTACATT
TGTCACAAATAGTCTTGGAAGCTGGAAACAAATACATTCATCAGAAGTGTAATTTGTCCGGACAACGAAGGTTGTCTGGC
AAAATGTAAGATTTCTGATGGATTGTTGCAAACAGCCTTGGAAGTTCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18963.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis