Browse Element(s) Details


Os.57475.1.S1_x_at

Description gb:D21280.1
DB_XREF= gi:425795
TID=Os.57475.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57475 (NCBI UniGene Cluster)
UG_TITLE=AD18 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial sequence
DEF=Oryza sativa AD18 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g389208/11Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g409501/11Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38870Os.27002.1.S1_at1/112+23501437..23501850hypothetical protein
LOC_Os02g38880OsAffx.24639.1.S1_at11/112+23502579..23503181hypothetical protein
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006950biological_processresponse to stress
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0008886molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0008943molecular_functionglyceraldehyde-3-phosphate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57475.1.S1_x_at--884--991Chr02:23521797..23521821 (25 bp)
AGGATGTCGAGCTCGTTGCCGTCAA
LOC_Os02g38920
Os.57475.1.S1_x_at--1038--2091Chr02:23522437..23522461 (25 bp)
ACATGTTCAAGTATGACACCGTCCA
LOC_Os02g38920
Os.57475.1.S1_x_at--216--9731Chr02:23522443..23522467 (25 bp)
TCAAGTATGACACCGTCCACGGCCA
LOC_Os02g38920
Os.57475.1.S1_x_at--434--2891Chr02:23522487..23522511 (25 bp)
AAGGTCAAGGACTCCAAGACCCTCA
LOC_Os02g38920
Os.57475.1.S1_x_at--588--2771Chr02:23522502..23522526 (25 bp)
AAGACCCTCATCTTTGGCACGAAAG
LOC_Os02g38920
Os.57475.1.S1_x_at--1021--9531Chr02:23522512..23522536 (25 bp)
TCTTTGGCACGAAAGAGGTTGCGGT
LOC_Os02g38920
Os.57475.1.S1_x_at--448--3971Chr02:23522533..23522643 (25 bp)
CGGTGTTCGGCTGCAGGAACCCTGA
LOC_Os02g38920
Os.57475.1.S1_x_at--746--9452Chr04:24087441..24087551 (25 bp)
TCGGCTGCAGGAACCCTGAGGAGAT
LOC_Os04g40950
Os.57475.1.S1_x_at--797--2931NONE
AAGGCAGCAAGCTCACTTGAAGGGT
NONE
Os.57475.1.S1_x_at--237--8611NONE
TGGTGCCAAGAAAGGGTCGTCATTT
NONE
Os.57475.1.S1_x_at--1049--4371NONE
GCCAAGAAAGGGTCGTCATTTTTTG
NONE
Target Sequence 
AGGATGTCGAGCTCGTTGCCGTCAACGATCCCTTCATCACCACCGAGTACATGACATACATGTTCAAGTATGACACCGTC
CACGGCCAGTGNAAGCATCATGAGGTCAAGGTCAAGGACTCCAAGACCCTCATCTTTGGCACGAAAGAGGTTGCGGTGTT
CGGCTGCAGGAACCCTGAGGAGATCCNATGGGCTGCGGCTGGNTGCTGAATACGTTNGTTGAGTCTACTNGGTGTTTNCA
CCGACAAGGNCAAGGCAGCAAGCTCACTTGAAGGGTGGTGCCAAGAAAGGGTCGTCATTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57475.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis