Browse Element(s) Details


Os.9186.1.S1_at

Description gb:AK120475.1
DB_XREF= gi:37990098
TID=Os.9186.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111D08, full insert sequence.
FL= gb:AK120475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3890011/11Nucleotide-binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38850NANA2+23489131..23489418hypothetical protein
LOC_Os02g38860OsAffx.2909.1.S1_at8/112+23489748..23490195expressed protein
LOC_Os02g38870Os.27002.1.S1_at1/112+23501437..23501850hypothetical protein
LOC_Os02g38880OsAffx.24639.1.S1_at11/112+23502579..23503181hypothetical protein
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9186.1.S1_at--239--2111Chr02:23509327..23509351 (25 bp)
ACATGAGTGGCTTGCGGCAGGTTCT
LOC_Os02g38900
Os.9186.1.S1_at--97--8271Chr02:23509312..23509336 (25 bp)
GGCAGGTTCTCTCAGATTTCAGATT
LOC_Os02g38900
Os.9186.1.S1_at--544--1471Chr02:23509251..23509275 (25 bp)
AGAATGGGCGCTGAACTATATCAAG
LOC_Os02g38900
Os.9186.1.S1_at--542--3671Chr02:23509211..23509235 (25 bp)
CTTTTGACAATGGTTGCATGCAGCG
LOC_Os02g38900
Os.9186.1.S1_at--487--2971Chr02:23509140..23509164 (25 bp)
AATGGGAGTACCTTTCCTTGGCAAG
LOC_Os02g38900
Os.9186.1.S1_at--998--2891Chr02:23509118..23509142 (25 bp)
AAGGTGCCCATGGATCCACAGCTAT
LOC_Os02g38900
Os.9186.1.S1_at--935--7971Chr02:23509107..23509131 (25 bp)
GGATCCACAGCTATGCAAGGCGGCT
LOC_Os02g38900
Os.9186.1.S1_at--902--7631Chr02:23509076..23509100 (25 bp)
GGGAGGTCATGCTTCGTCGATCAGA
LOC_Os02g38900
Os.9186.1.S1_at--181--9411Chr02:23509063..23509087 (25 bp)
TCGTCGATCAGAAGTGCAGTGCTAG
LOC_Os02g38900
Os.9186.1.S1_at--501--531Chr02:23508906..23508930 (25 bp)
ATCGAAGCTCAGTGTAGATATACCT
LOC_Os02g38900
Os.9186.1.S1_at--970--5471Chr02:23508839..23508863 (25 bp)
GAACTATTCTGCTTGTGGAATCACT
LOC_Os02g38900
Target Sequence 
ACATGAGTGGCTTGCGGCAGGTTCTCTCAGATTTCAGATTCGTGAAGCAAGGTGAGGGAGGCGAGANGGATGCTACAGAA
TGGGCGCTGAACTATATCAAGGAGAAAGCTCCTGAGCTTTTGACAATGGTTGCATGCAGCGAGGTGTTTGATAGCAGCAA
GGGTGGNGCGGAGAAAATGTGCAACGAAATGGGAGTACCTTTCCTTGGCAAGGTGCCCATGGATCCACAGCTATGCAAGG
CGGCTGAGGAAGGGAGGTCATGCTTCGTCGATCAGAAGTGCAGTGCTAGTGCACCAGCTCTTAAAAGCATAGTCAAGAAG
CTGATCGANAATCAAGATTGAGTGAACTTTTTTTNAAAAAAAGGATAATTGAAGACTGAGTGAACTAGTGATGATGGTTT
CTGGGAAACGGGATGNGGAGATATCGAAGCTCAGTGTAGATATACCTGNTACTNTCCCATATGTTTTGAAGTTCAGTTTT
GGTTGTGTAGAACTATTCTGCTTGTGGAATCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis