Browse Element(s) Details


OsAffx.12399.1.S1_at

Description tigr:9630.m03731
TID=OsAffx.12399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g388908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38850NANA2+23489131..23489418hypothetical protein
LOC_Os02g38860OsAffx.2909.1.S1_at8/112+23489748..23490195expressed protein
LOC_Os02g38870Os.27002.1.S1_at1/112+23501437..23501850hypothetical protein
LOC_Os02g38880OsAffx.24639.1.S1_at11/112+23502579..23503181hypothetical protein
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12399.1.S1_at--11--6051NONE
GAGATCGTCAGCTCATCGGCTATAG
NONE
OsAffx.12399.1.S1_at--910--6391NONE
GATCGTCAGCTCATCGGCTATAGAT
NONE
OsAffx.12399.1.S1_at--223--9411NONE
TCGTCAGCTCATCGGCTATAGATGA
NONE
OsAffx.12399.1.S1_at--135--5031Chr02:23508106..23508129 (24 bp)
GCAGTGTGAGTGTGACAGTTTATCC
LOC_Os02g38890
OsAffx.12399.1.S1_at--381--1211Chr02:23508121..23508145 (25 bp)
AGTTTATCCGGCTACGACGCAGCGT
LOC_Os02g38890
OsAffx.12399.1.S1_at--920--10331Chr02:23508123..23508147 (25 bp)
TTTATCCGGCTACGACGCAGCGTCG
LOC_Os02g38890
OsAffx.12399.1.S1_at--215--9931Chr02:23508133..23508157 (25 bp)
TACGACGCAGCGTCGCAGGCTCGCA
LOC_Os02g38890
OsAffx.12399.1.S1_at--979--912Chr06:8181904..8181928 (25 bp)
AGGCTCGCAGCGCTGAGCAGCAGCA
NONE
OsAffx.12399.1.S1_at--92--3411Chr02:23508172..23508196 (25 bp)
CAGCAGAGCCCAGTGTTTTGGCCGA
LOC_Os02g38890
OsAffx.12399.1.S1_at--892--1092Chr06:8181937..8181961 (25 bp)
AGTGTTTTGGCCGAGACCGAGCGTC
NONE
OsAffx.12399.1.S1_at--747--10392Chr06:8181941..8181965 (25 bp)
TTTTGGCCGAGACCGAGCGTCCCCG
NONE
Target Sequence 
GAGATCGTCAGCTCATCGGCTATAGATGAATTGGAGCAGTGTGAGTGTGACAGTTTATCCGGCTACGACGCAGCGTCGCA
GGCTCGCAGCGCTGAGCAGCAGCAGCAGAGCCCAGTGTTTTGGCCGAGACCGAGCGTCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis