Browse Element(s) Details


OsAffx.24639.1.S1_at

Description tigr:9630.m03732
TID=OsAffx.24639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3888011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38840Os.26858.1.S1_at7/112+23474452..23480943Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
LOC_Os02g38850NANA2+23489131..23489418hypothetical protein
LOC_Os02g38860OsAffx.2909.1.S1_at8/112+23489748..23490195expressed protein
LOC_Os02g38870Os.27002.1.S1_at1/112+23501437..23501850hypothetical protein
LOC_Os02g38880OsAffx.24639.1.S1_at11/112+23502579..23503181hypothetical protein
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24639.1.S1_at--532--9191Chr02:23503120..23503144 (25 bp)
TGCCTCGTCACGATGGGCTGCCCGA
LOC_Os02g38880
OsAffx.24639.1.S1_at--15--8471Chr02:23503093..23503117 (25 bp)
TGGCCCGGTCCAACGATAAGGGAGC
LOC_Os02g38880
OsAffx.24639.1.S1_at--172--9931Chr02:23503054..23503078 (25 bp)
TACGGACATATAAGGCACAGGGAAA
LOC_Os02g38880
OsAffx.24639.1.S1_at--1064--10751Chr02:23503021..23503045 (25 bp)
TTGACTTCCTCAACTATCGCACGAG
LOC_Os02g38880
OsAffx.24639.1.S1_at--1078--5098Chr09:17727936..17727957 (22 bp)
GCACGAGTATGATTCATGTCCTCCA
NONE
OsAffx.24639.1.S1_at--882--2194Chr06:20759715..20759737 (23 bp)
ACAAAACCGGGCATATCGACTCCTC
NONE
OsAffx.24639.1.S1_at--963--1971Chr02:23502957..23502981 (25 bp)
ACTCCTCCAGCTATCAAAACCGGTG
LOC_Os02g38880
OsAffx.24639.1.S1_at--705--2372Chr02:23502941..23502965 (25 bp)
AAACCGGTGCAAACAATGCTTCGGG
LOC_Os02g38880
OsAffx.24639.1.S1_at--452--2771Chr02:23502889..23502913 (25 bp)
AAGAGCTCGTGCTTCGGTTGGCAGC
LOC_Os02g38880
OsAffx.24639.1.S1_at--249--10811Chr02:23502637..23502661 (25 bp)
TTGGTCAAGACCGTCACGTAGGCGT
LOC_Os02g38880
OsAffx.24639.1.S1_at--223--10092Chr06:26100524..26100545 (22 bp)
TAGGCGTCACGCCAGACAAAACCAC
NONE
Target Sequence 
TGCCTCGTCACGATGGGCTGCCCGACCTGGCCCGGTCCAACGATAAGGGAGCCAAAATAGACTTATTACGGACATATAAG
GCACAGGGAAAATTATACTTTGACTTCCTCAACTATCGCACGAGTATGATTCATGTCCTCCAACCACAAAACCGGGCATA
TCGACTCCTCCAGCTATCAAAACCGGTGCAAACAATGCTTCGGGGAGGATCTCGTGCTTCGTGCTTCGGGGAAGAGCTCG
TGCTTCGGTTGGCAGCCGCCGCCGCCGCTCCCTACCACCGTCCACACCGCCGCTCCGCCCAAGGACAAAGACTTGGTCAA
GACCGTCACGTAGGCGTCACGCCAGACAAAACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis