Browse Element(s) Details


Os.26858.1.S1_at

Description gb:AK073697.1
DB_XREF= gi:32983720
TID=Os.26858.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061P12, full insert sequence.
FL= gb:AK073697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g388407/11Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38810Os.18441.1.S1_at11/112+23455595..2345997726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38820Os.14404.1.S1_at11/112+23460100..23462169expressed protein
LOC_Os02g38830Os.40855.2.S1_x_at7/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_x_at4/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40360.1.S1_x_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38840Os.26858.1.S1_at7/112+23474452..23480943Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
LOC_Os02g38850NANA2+23489131..23489418hypothetical protein
LOC_Os02g38860OsAffx.2909.1.S1_at8/112+23489748..23490195expressed protein
LOC_Os02g38870Os.27002.1.S1_at1/112+23501437..23501850hypothetical protein
LOC_Os02g38880OsAffx.24639.1.S1_at11/112+23502579..23503181hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006006biological_processglucose metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004345molecular_functionglucose-6-phosphate 1-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26858.1.S1_at--756--5291Chr02:23480538..23480562 (25 bp)
GAAGGCCCTGCCGTACAAGCCGGGA
LOC_Os02g38840
Os.26858.1.S1_at--534--5031Chr02:23480613..23480637 (25 bp)
GCAGACCCATGGCTACGTTTGGATA
LOC_Os02g38840
Os.26858.1.S1_at--280--9191Chr02:23480640..23480664 (25 bp)
TCCAACCCTTTCAAAATTCTAGCCG
LOC_Os02g38840
Os.26858.1.S1_at--1109--91Chr02:23480655..23480679 (25 bp)
ATTCTAGCCGCTATGTACCAATGCA
LOC_Os02g38840
Os.26858.1.S1_at--606--3491Chr02:23480678..23480702 (25 bp)
CAGGCTCTGTCTAGATGCCGGTTTA
LOC_Os02g38840
Os.26858.1.S1_at--1062--9171NONE
TGCCGGTTTATCAGGTGCTTTGTAA
NONE
Os.26858.1.S1_at--370--9891Chr02:23480742..23480766 (25 bp)
TACTTCGCCTGTCTAGAACACTGTA
LOC_Os02g38840
Os.26858.1.S1_at--659--8091Chr02:23480843..23480867 (25 bp)
GGACCTGTTATGAGTTTGCCACAAG
LOC_Os02g38840
Os.26858.1.S1_at--570--391Chr02:23480931..23480955 (25 bp)
ATCAGACTCTGGTATCCTATATGTA
NONE
Os.26858.1.S1_at--1120--6871NONE
GTATCGGTTGGTATTTATCAGGCAC
NONE
Os.26858.1.S1_at--102--1731NONE
ACCAGTCGGCACCAGCTAATTAATA
NONE
Target Sequence 
GAAGGCCCTGCCGTACAAGCCGGGAACCCGGGGACCCCCAGAGGCNGACGAGCTGAGCAAGAGGATGNGCTACGTGCAGA
CCCATGGCTACGTTTGGATACCTCCAACCCTTTCAAAATTCTAGCCGCTATGTACCAATGCAGGCTCTGTCTAGATGCCG
GTTTATCAGGTGCTTTGTAATATTTTTTTTAAAAGAACTCCTACTACTTCGCCTGTCTAGAACACTGTAATGTTGGTGAT
CTTGGAATAAAAAGAAGACTATATATGCTGCAAGTAAGCAAGTTANCACATGTTNTGGTTAGAGTTGGACCTGTTATGAG
TTTGCCACAAGCAACTATATTATAGGGGNTACTATACCATGGATCTTGTTNAGACAGGATGATATCTATAAAGTATCAGA
CTCTGGTATCCTATATGTACTAGGGGTATCGGTTGGTATTTATCAGGCACCAACTGATGCTCGTCGGCACCAGTCGGCAC
CAGCTAATTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis