Browse Element(s) Details


OsAffx.2909.1.S1_at

Description tigr:9630.m03728
TID=OsAffx.2909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g388608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38830Os.40855.2.S1_x_at7/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_x_at4/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40360.1.S1_x_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38840Os.26858.1.S1_at7/112+23474452..23480943Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
LOC_Os02g38850NANA2+23489131..23489418hypothetical protein
LOC_Os02g38860OsAffx.2909.1.S1_at8/112+23489748..23490195expressed protein
LOC_Os02g38870Os.27002.1.S1_at1/112+23501437..23501850hypothetical protein
LOC_Os02g38880OsAffx.24639.1.S1_at11/112+23502579..23503181hypothetical protein
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2909.1.S1_at--544--1591Chr02:23490107..23490131 (25 bp)
AGCTCGTCTCCATCGTGAGTGGGCT
LOC_Os02g38860
OsAffx.2909.1.S1_at--678--9491Chr02:23490101..23490125 (25 bp)
TCTCCATCGTGAGTGGGCTTCGGCG
LOC_Os02g38860
OsAffx.2909.1.S1_at--246--6191Chr02:23490063..23490087 (25 bp)
GAGGACGACGCCAGAAAGGCCCCGG
LOC_Os02g38860
OsAffx.2909.1.S1_at--231--9351Chr02:23490035..23490059 (25 bp)
TCGCGGTGGCTTCCGCCGAGGAGGA
LOC_Os02g38860
OsAffx.2909.1.S1_at--888--7791Chr02:23490003..23490027 (25 bp)
GGTCGCCGGATCGGCTTTGCTCCGA
LOC_Os02g38860
OsAffx.2909.1.S1_at--912--9711Chr02:23489958..23489982 (25 bp)
TCAACGCTGAGGAGGCCGCACCTGT
LOC_Os02g38860
OsAffx.2909.1.S1_at--100--1351Chr02:23489814..23489836 (23 bp)
AGAGATGTTTCTCAGTACTGTGGAT
LOC_Os02g38860
OsAffx.2909.1.S1_at--756--3751Chr02:23489804..23489828 (25 bp)
CTCAGTACTGTGGATGTTGCATTTG
LOC_Os02g38860
OsAffx.2909.1.S1_at--822--4951NONE
GCATTTGATTTCTTTGGATGTTCCA
NONE
OsAffx.2909.1.S1_at--113--7991NONE
GGATGTTCCACATATTGTGTTTTTG
NONE
OsAffx.2909.1.S1_at--295--10811NONE
TTGTGTTTTTGTTGGACACACAAGA
NONE
Target Sequence 
AGCTCGTCTCCATCGTGAGTGGGCTTCGGCGGCAGCGCTCGGATGAGGACGACGCCAGAAAGGCCCCGGCCTTCGCGGTG
GCTTCCGCCGAGGAGGAAGCAGCCGGTCGCCGGATCGGCTTTGCTCCGACCGGCGCCTCCTCGTCCTCCTCAACGCTGAG
GAGGCCGCACCTGTCGGAGGTGTGGGACGAGGAGGAGGAAGAGATGTTTCTCAGTACTGTGGATGTTGCATTTGATTTCT
TTGGATGTTCCACATATTGTGTTTTTGTTGGACACACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis